Rahnella sikkimica: BV494_17860
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Entry
BV494_17860 CDS
T05331
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rox
Rahnella sikkimica
Pathway
rox03420
Nucleotide excision repair
rox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BV494_17860
03430 Mismatch repair
BV494_17860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_17860
Enzymes [BR:
rox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BV494_17860
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BV494_17860
MMR (mismatch excision repair)
Other MMR factors
BV494_17860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_22
DUF4391
Motif
Other DBs
NCBI-ProteinID:
AVF36674
UniProt:
A0A2L1UUY4
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All DBs
Position
3875593..3877755
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AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVENCSPYSIMAV
TFTNKAAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQM
RLIKRLIKALNIDEKQWPPRQAMWYINGKKDEGLRPQHVETYNNPIEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGDN
NNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPNAETIRLEQNYRSTSTILKAANSLIENN
SGRMGKNLWTEDGAGEPISLYCAFNELDESRFVVSRIKTWQDNGNVLKDCAILYRSNAQS
RVLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQMTMWQATRALLQDKVLAGRAASSLQRFTELVDALAHETADMPLHVQ
TDRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAAL
EAGEGQADANQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEESGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVSHRPSRFVGELPEDCVEEVRLRANVSRPMSNRSMG
TPTNVSDTGFKLGQRVNHPKFGEGTIVNMEGSGEHSRLQVAFPGEGIKWLVAAYAKLEAV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgacctgctcgacagcctgaatgaaaaacaacgtgaagccgtggccgcg
ccgcgcagcaatctgttggtgctggccggagcaggcagtggcaaaacccgcgtgctggtg
catcgcatcgcgtggcttctggcggtagaaaattgctcgccgtattccatcatggcggtg
acgtttaccaataaagccgcagcggaaatgcgccatcgtattgatcagctgatcggtacc
agtcagggcggcatgtggatcgggacgttccacgggctggcgcaccgtttgttgcgtgcg
caccatctcgacgccaatctgccgcaagatttccagattttagacagcgacgaccagatg
cgtctgattaagcgcctgattaaagcgctgaacatcgacgagaaacaatggccgccgcgt
caggcgatgtggtacatcaacggcaaaaaagacgaaggtttgcgtccgcagcacgttgaa
acttataacaatcccatcgaagcgacctggttacgtatttatcaggcgtatcaggaagcc
tgtgaccgcgccgggctggtggatttcgccgaactgctgttacgcgcccatgagttgtgg
ctgaacaagccgcatatccttcagcattatcgcgaacgtttcaccaacctgatggtggac
gaattccaggacaccaacagcattcagtatgcgtggatccgtctgctggcgggcgacaac
aataacgtgatgatcgtcggcgacgatgaccagtcgatctacggctggcgcggtgcgcag
gtcgaaaacatccagcgcttcctgaaagatttcccgaatgcggaaaccattcgtttggaa
cagaactaccgctccaccagcaccattctgaaagccgccaactcactgatcgaaaataac
agcggtcgtatggggaaaaacctgtggaccgaagacggcgcgggcgagccgatttcgctg
tactgtgcgttcaacgaacttgatgaatcgcgctttgtggtcagccggattaaaacctgg
caggataacggcaacgtgctgaaagattgcgctattttgtaccgcagcaacgcccagtcg
cgcgtgctggaagaagcattattgcagatggcgatgccgtaccgcatttacggcggccag
cgattcttcgatcgtcaggaaatcaaagatgcgctggcgtacctgcgtctgatgtcgaac
cgcaatgacgatgccgcgtttgaacgtgtagtgaatacgccaacgcgaggcatcggcgac
cgtacgctggatgtggttcgccagaccgcgcgcgaccgtcagatgaccatgtggcaggcg
acgcgtgcgctgttgcaggacaaagtgctcgcgggccgtgcggcttcctcgctgcaacgt
tttaccgaactggtggacgcgctggcgcatgaaaccgcggatatgccgctgcacgtccag
actgaccgcgtaatcaaagattccggcctgtttatcatgtatgagcaggaaaaaggcgaa
aaaggtcaggcacgaatcgaaaacttagaggaactggtgacggcaacgcgccagttcagc
tatcaggatgaagacgaagacctgatgccgttgcaggcattcttgtcccacgccgcgctt
gaagcgggcgaagggcaggcggatgcaaatcaggatgcggtgcagctgatgacgcttcac
tcggccaaagggctggagttcccgcaggtctttatcgtcggcatggaagaaggcatgttc
ccgagccagatgtcgctggaagagagcggtcgtctggaagaggaacgtcgtctggcgtac
gtgggcgtgacccgcgcgatgcaaaaactgacgctgacgtatgcggaaacccgccgtctg
tacggcaaagaagtgtcgcaccggccgtcacgttttgtcggcgaactgccggaagactgt
gtcgaagaagttcggctacgcgccaacgtttcacgcccgatgagcaaccgcagcatgggc
acgccaaccaacgtcagcgacactggtttcaagcttgggcagcgcgttaatcaccctaaa
ttcggtgaaggcaccatcgtcaatatggaaggcagcggcgaacacagccgtctgcaagtc
gcgttccccggagaagggatcaagtggcttgttgcggcctacgcgaaactcgaggcagtc
tga
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