Rahnella sikkimica: BV494_17890
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Entry
BV494_17890 CDS
T05331
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rox
Rahnella sikkimica
Pathway
rox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV494_17890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rox03019
]
BV494_17890
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_17890
Enzymes [BR:
rox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BV494_17890
Messenger RNA biogenesis [BR:
rox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BV494_17890
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BV494_17890
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AVF36680
UniProt:
A0A2L1UUR1
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All DBs
Position
3882574..3884406
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AA seq
610 aa
AA seq
DB search
MSTAAVINKEELAHQVLRDTFGYQQFRPGQQTIINTAISGRDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLMAAGVEAGCLNSTQTREQQQEVMAGCRTGRIKMLY
IAPERLMLGDFLEQLQQWNPAMLAVDEAHCISQWGHDFRPEYRALGQLKLRYPQLPVIAL
TATADEATRNDIVRLLELNDPLIQVSSFDRPNIRYTLVEKFKPLDQLIRFVQDQRGKSGI
IYCNSRAKVEDTAARLQSRGLSVGAYHAGLDNETRARVQEGFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQ
QDVERHKLNAMNAFAEAQTCRRLVLLNYFGEGKQNACGNCDVCLDPPKRYDGLLDAQKAL
SVVARVGQRFGLGYVVEVLRGSNNQRIREYGHEKLTVYGIGKEHSNEHWTSVVRQLIHLG
LIMQNIAMHSALQLTESARPVLRGEIPLQLAVPRIQTLKIKSTSRQKTYGGNYDHKLFAK
LRKLRKSLADENNVPPYVVFNDTTLLEMAEHLPISPSDLLDITGVGQRKLEKFGRPFMTM
IRDHIDNGDE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
gtgtctacggcggcagtgataaacaaagaagagctggctcatcaggtattacgcgatacc
ttcggctatcagcaattcagaccaggtcagcaaactatcatcaataccgccatttctgga
cgggattgcctggtcgtgatgccgaccggcggcggtaaatcgctgtgctaccaaatccct
gcgctggtgatggacggcctgacgctggtcgtttctccgcttatttcgctgatgaaagat
caggttgatcagctgatggcggcgggcgttgaagcgggatgtctgaactcgacgcaaacc
cgcgagcaacagcaggaagtaatggccggttgccgtacgggccgcatcaaaatgctgtat
atcgcgccggaacgcctgatgctcggtgatttcctcgaacagttgcaacagtggaatccg
gccatgctggctgtcgatgaagcccactgtatttcccaatggggccacgatttccgtccg
gaatatcgcgcgctcggccagctgaagctgcgctacccgcaattaccggtgatcgcgctg
accgcgaccgccgatgaagccacccgtaacgatattgttcgtcttcttgagctgaacgat
ccgctgattcaggtcagcagcttcgatcgcccgaacatccgttacacgctggtggaaaag
tttaaaccgctcgatcagctgatccgttttgtgcaggatcagcgcggtaaaagcggcatt
atttactgcaacagccgcgcaaaagtcgaagacaccgccgcacgactgcaaagccgcggg
ctgagcgttggcgcatatcatgccggtctggacaacgaaacccgcgcccgcgtgcaggaa
ggttttcagcgcgatgacctgcaaattgtggtcgcgaccgtcgcattcggaatgggcatc
aacaaaccgaacgttcgttttgtggttcactttgatattccgcgcacgattgaatcttac
tatcaggaaacagggcgtgcaggacgtgatggtctgcctgccgaagcggtgctgttatac
gatccggcagatatggcgtggctgcgccgctgtctggaagaaaaaccggccggtgcgcaa
caggatgtggaacgccataaactgaatgcgatgaacgcatttgctgaggcgcaaacctgc
cgccgtctggtgctgcttaactattttggtgaaggcaaacaaaacgcctgcggtaactgc
gacgtctgcctcgatccgccaaaacgctacgacggcctgctggacgcgcaaaaagcgctg
tcggtggtcgcgcgcgtcgggcaacgctttggtttggggtacgtggtcgaagtgctgcgc
ggctcgaacaatcagcgtatccgcgaatatggtcacgaaaaactgacggtttacggcatc
ggtaaagaacacagcaacgagcactggaccagcgtggtacgccagctgattcacctcgga
ctgattatgcaaaacatcgctatgcattcggcgttacagctgaccgaatccgcccgtccg
gttctgcgcggtgaaattccgttgcagctggcagtgccgcgtattcagacgctgaaaatt
aaaagcacgtcacgccagaaaacctatggcggaaattacgatcacaagctgtttgccaaa
ttgcgtaaactgcgtaaatcgctggcggatgaaaataatgtcccgccgtacgtggtcttc
aatgacacaacgctgctggaaatggcggagcatctgccgataagcccgagcgatttgctg
gacatcaccggcgtcggtcagcgtaagctggagaaattcggtcggccatttatgacgatg
atccgcgaccatatcgataacggcgacgagtaa
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