Rahnella sikkimica: BV494_18360
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Entry
BV494_18360 CDS
T05331
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rox
Rahnella sikkimica
Pathway
rox03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BV494_18360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rox03021
]
BV494_18360
03400 DNA repair and recombination proteins [BR:
rox03400
]
BV494_18360
Enzymes [BR:
rox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BV494_18360
Transcription machinery [BR:
rox03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BV494_18360
DNA repair and recombination proteins [BR:
rox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BV494_18360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AVF36758
UniProt:
A0A2L1UVA2
LinkDB
All DBs
Position
3977483..3981703
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRGG
LASLHARVKVRITEEIKNTEGEVTHKTSIIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDIIKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNTGTIKL
SNHKHVSNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMGKGDGASVNGGETVANW
DPHTMPVISEVSGFIRFADMVDTQTITRQTDDLTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGTQIHSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGTDFLEGEQAEMSRVKIANRKLEAEGKITATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYSYHQERARRKAQGDVPV
APPVSADEATANLAELLNAGFGNNDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
attttcggaccagtaaaagactacgaatgcctgtgcggtaagtacaagcgtttaaaacat
cgtggcgtgatctgcgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcttccccgacagcacacatctggttcctgaaatcgctg
ccttcgcgcatcggtttgctgctggatatgccactgcgtgacatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgactaacctcgaaaaacgccagatcctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaagatg
ggtgctgaagctattcaggctctgttgaaaaacatggatctggaagcggaatgcgaacaa
ctgcgtgaagagttgaacgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgctggaagcgtttgttcaatctggtaacaaaccagagtggatgatcctgacc
gtgctgcctgttctgccaccagacttgcgtccattggttccgttggacggcggccgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgcctgttggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gaagcggtagatgctttgctggataacggccgtcgcggtcgtgcaatcaccggctctaac
aagcgtccgctgaaatctctggcagacatgattaaaggtaaacagggtcgtttccgtcag
aacttgctgggtaaacgtgtcgactactctggtcgttccgttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atctacggcaaattggagctgcgtggcctggccaccactatcaaagccgctaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttaggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcaattcagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactacatgactcgtgactgtgttaacgcc
aaaggcgaaggcatggttctgaccggtcctaaagaagctgagcgtatttatcgcggcggt
ttggcctctctgcatgcgcgtgtcaaagtgcgtattaccgaagagatcaaaaataccgaa
ggcgaagttacgcacaagacgtcgattattgacacgactgtcggtcgcgccatcctgtgg
atgatcgtgccaaaaggtctgccgttctctatcgtcaaccagcctctgggcaaaaaagct
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttattttt
gctgaccagatcatgtacaccggttttgcttacgctgcccgttcaggcgcgtcagtcggt
atcgatgacatggtaatccctgcgaagaaagcagagatcatcgaagaagcagaaaccgaa
gttgctgaaatccaggaacagttccagtctggtctggtcactgctggcgaacgctataac
aaagtgatcgacatctgggctgcggccaacgaacgtgttgctaaggcaatgatggaaaac
ttgtctgttgaagacgtcgtcaaccgtgacggtgttgttgaacagcaggtttccttcaac
agtatctttatgatggccgactccggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggcctgatggctaagccggatggttccatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgcgcgt
aaaggcttggcggataccgcacttaaaacggctaactccggttatctgacccgtcgtctg
gttgacgtggcacaggatctggttgttaccgaagacgactgtgggactcacgaaggcatc
atgatgactccggtcatcgaaggtggcgacgttaaagaaccactgcgcgaacgtgtattg
ggtcgtgtaactgcagaagatatcatcaagccgggtacggcagatatcctggttccacgt
aacaccctgcttcatgagaagacgtgtgatctgttagaagaaaactccgtcgacagcgtg
aaagtacgttcagtcgtaagttgcgaaaccgactttggtgtttgtgcaaactgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttattgcagca
cagtccatcggtgaaccgggtactcagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaccggtaccattaaactg
agcaaccacaagcacgttagcaactctaacggcaaactggttatcacttcccgtaacact
gagctgaaattgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
tccgtgatgggcaaaggtgatggcgcatctgttaacggcggcgagaccgttgctaactgg
gatccgcacacaatgccagttatcagtgaagtgagtggtttcattcgctttgccgatatg
gttgatactcagaccattacccgtcagacagatgacctgaccggtttgtcctctctggtt
gttcttgattctgcagaacgtactggtagcggtaaagacctgcgtccggcactgaaaatc
gttgatgctaaaggcgacgacgtattgatcccaggtacagatatgcctgctcaatacttc
ctgccaggtaaagcgatcgttcagctggaagatggtactcagattcactcgggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtcgtccgaaagagcctgcaatccttgctgaaatcagc
gggatcatctccttcggtaaagaaaccaaaggcaaacgtcgtctggtaatttctccgttg
gatggcagcgatgcttacgaagaaatgattccaaaatggcgtcagctgaacgtgttcgaa
ggcgaagttgtggaacgtggtgacgtcgtatccgacggccctgagtctccacatgacatc
ctgcgtctgcgtggtgttcatgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgcgggtggcacagacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtaagctggaagctgaaggcaaaatcacggca
acctttagtcgtgacctgctcggtatcaccaaggcatccctggcgaccgaatccttcatc
tctgctgcgtcgttccaggaaaccacgcgcgttcttaccgaagcggctgttgccggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgtgggtcgtctgatcccagccggt
accggttactcttaccatcaggaacgtgcacgtcgtaaagcacagggtgatgtgccagtc
gcaccgccagtgagcgcggatgaagcaacggctaacctggctgaattgctgaacgcaggt
ttcggtaacaacgacgagtaa
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