Rahnella sikkimica: BV494_19925
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Entry
BV494_19925 CDS
T05331
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rox
Rahnella sikkimica
Pathway
rox02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BV494_19925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rox03021
]
BV494_19925
Transcription machinery [BR:
rox03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BV494_19925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4611
Sas-6-like_oligomerization
Motif
Other DBs
NCBI-ProteinID:
AVF37035
UniProt:
A0A2L1UVT6
LinkDB
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Position
complement(4313417..4315255)
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AA seq
612 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAP
DADDLMLAENRPDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEVRLSDLITGFVDPNAEEEIAPTA
THVGSELTTEEQTDDEEDEDEDDDAEDDNSIDPELARQKFTELREQHEATRLVIKKNGRS
HKSAAEEILKLSDVFKQFRLVPKQFDFLVNSMRSMMDRVRAQERLIMKVCVEQCKMPKKN
FVNLFAGNETSDTWFDAALAMGKPWSEKLKEVTEDVQRGLMKLRQIEEETGLTIEQVKDI
NRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPE
ELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLR
SATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagcttaagctacttgtcacccgtggtaaggagcaaggc
tatctgacctatgctgaggtcaatgaccatctgccggaagatatcgtcgattccgaccag
atcgaagacatcatccagatgattaacgacatgggcattcaggttcttgaagaagcccct
gacgccgatgatttaatgctggccgaaaaccgccctgatacggacgaagacgctgcagaa
gcggcggcgcaggtactttccagcgtagaatctgaaattggccgtaccaccgaccctgtg
cgtatgtatatgcgcgagatgggtaccgttgaacttctgacccgtgaaggcgaaatcgac
atcgccaaacgtatcgaagacggtatcaatcaggtccagtgctccgttgctgaatatcct
gaagctatcacctatttgttagagcaatatgaccgcgttgaagcaggcgaagttcgtctg
tctgatctgatcaccggttttgttgaccctaacgccgaagaagaaatcgcgccaactgcc
actcacgtgggttctgaactgaccacagaagagcagactgatgacgaagaagacgaagat
gaagacgacgatgctgaagacgacaacagcatcgacccggaactggctcgccagaagttc
accgaactgcgtgaacagcatgaagcgacgcgtctggtcatcaagaaaaacggccgtagc
cacaagagtgcagcagaagaaatcctgaaactgtctgacgtattcaaacagttccgtctg
gtgccaaaacagttcgatttcctggttaacagcatgcgttccatgatggatcgcgtgcgt
gcccaggaacgtctgatcatgaaagtgtgcgttgaacagtgcaaaatgccgaagaaaaac
ttcgtcaacctgttcgccggtaacgaaaccagcgatacctggtttgatgccgctctggct
atgggtaaaccgtggtctgagaagttgaaagaagtcaccgaagacgtacaacgcggcctg
atgaaactgcgtcagatcgaagaagaaactggcctgactatcgaacaggttaaagatatc
aaccgtcgcatgtcgatcggcgaagcgaaagcccgtcgcgcgaagaaagagatggttgaa
gcaaacttacgtctggttatttctatcgcgaagaaatacaccaaccgtggtctgcaattc
ctcgacctgatccaggaaggtaacatcggcctgatgaaagccgttgataagtttgaatat
cgccgtggttataagttctctacttatgcaacatggtggatccgtcaggctatcacccgc
tccatcgctgaccaggcgcgtaccatccgtatcccggtacatatgattgagacaatcaac
aaactcaaccgtatttcgcgtcagatgctgcaagagatgggccgcgaacctacgccggaa
gagctggctgaacgtatgctgatgccggaagacaaaatccgtaaagtgctgaaaatcgcc
aaagagccaatctccatggaaacgccaatcggcgacgatgaagattcgcatctgggtgat
ttcatcgaggatacaaccctcgaactgccactggattctgcaacgtctgaaagcctgcgt
tctgcaacgcatgacgttctggctggcctgaccgcacgtgaagcgaaagttctgcgtatg
cgtttcggtatcgacatgaacactgaccacactctggaagaagtgggcaaacagttcgac
gttacccgtgaacgtatccgtcagatcgaagcgaaagcgttgcgtaaactgcgccaccca
agccgctccgaagtgctgcgcagtttcctggacgattaa
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