Rahnella sikkimica: BV494_20260
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Entry
BV494_20260 CDS
T05331
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
rox
Rahnella sikkimica
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rox03016
]
BV494_20260
Enzymes [BR:
rox01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
BV494_20260
Transfer RNA biogenesis [BR:
rox03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BV494_20260
Prokaryotic type
BV494_20260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
AVF37513
UniProt:
A0A2L1UX38
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All DBs
Position
4393543..4394589
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AA seq
348 aa
AA seq
DB search
MDMSRLTWLLGEPTATGLLKANPEDFIVEEDLGFEPDGEGEHLLVRIRKNGCNTQFVAEQ
LARFAKVHPRDVSYAGLKDRHAVTEQWFCLHLPGKADPDLSQFNPEGCEVIRASRHRKKM
RIGTLKGNEFTLVLRQISDIENVEERLAKIVEQGVPNYFGTQRFGRGGNNLVQAKRWATN
EARPKERAKRSFYLSASRSAMFNIVASQRLAEGTVRQAILGDALQLSGRGSWFVAKAEEF
ESLQPRVENGELLVTAPLPGDGPLGTLEEAEAFEQACLVGQEDLLSLLKRERVEPARRAI
MLQPLQMKWQRLDDVTLELKFWLPAGSYATSVVRELMHLDEMNADITE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atagatatgtcccgtctcacctggttgctgggtgaacccaccgccaccggcctgctgaaa
gccaatccggaagactttatcgtcgaagaggatttggggtttgaaccggatggcgaaggt
gaacatctgttagtgcggatccgcaaaaatggctgcaatactcagtttgttgccgagcag
ctggcgcgttttgccaaagtgcatccgcgagacgtcagctacgccgggcttaaagaccgg
cacgcggtaacggaacagtggttttgcctgcatctgcccggcaaggcagatcctgatttg
agccagttcaatcccgaaggctgcgaagtgatccgcgcttcgcgccatcgcaaaaaaatg
cgcatcgggaccttgaaaggcaatgaatttacactggttctgcgtcagataagcgacatc
gagaatgtcgaagaacgtctggcgaaaattgttgagcagggcgtaccgaactacttcggc
acccagcgttttggccgcggcggtaataatctggtgcaggcgaaacgctgggcaaccaat
gaagcccgcccgaaagagcgcgccaaacgcagtttctatttatccgccagccgcagtgcg
atgtttaacattgtcgccagccagcgtctggcagaaggcaccgtccgtcaggcaatactg
ggtgatgcattgcaactcagtggccgcggcagctggttcgtggcgaaagcggaagagttt
gaatcgctgcaaccgcgtgtggaaaacggcgaactgctggtgactgcgccgttgccaggt
gacggaccgttaggcacgttagaagaagcggaagcctttgagcaggcttgtctggtcggg
caggaggatttactttcactgctcaaacgcgagcgtgtagaacctgcgcgccgcgccatt
atgctccagccgttgcaaatgaaatggcagcgcctggatgacgtcactctggaacttaaa
ttctggctaccggcgggcagttatgccaccagcgtcgtgcgcgaactgatgcatctggat
gaaatgaatgcggatattactgagtaa
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