Rahnella sikkimica: BV494_21955
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Entry
BV494_21955 CDS
T05331
Name
(GenBank) pectate lyase
KO
K22994
pectate disaccharide-lyase [EC:
4.2.2.9
]
Organism
rox
Rahnella sikkimica
Pathway
rox00040
Pentose and glucuronate interconversions
rox01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rox00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
BV494_21955
Enzymes [BR:
rox01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.9 pectate disaccharide-lyase
BV494_21955
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Gene cluster
GFIT
Motif
Pfam:
Beta_helix
Pel9A-like_beta_helix
Motif
Other DBs
NCBI-ProteinID:
AVF37596
UniProt:
A0A2L1UXA8
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All DBs
Position
unnamed1:112462..114630
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AA seq
722 aa
AA seq
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MWEHKLAIVALSLGISAQCIAAALPEPENLRWHSITFGQSTDVNFATNVLPEKVGMNDVR
TADDKPIPAEGIVLTTPFTLESRGGKVGNSHDGLTYFYTRLPAEANFQLEADITLDQFGP
ENGAKPAGQEGAGLLVRDILGAPREPVTKPGIEELPAASNMVMNSVMAVGDKPPVVALIA
RQGVKQPWGNTGIGIVREEYHPLTTPAHFSLRLTRTDSGFDVAYAPQGSDQWTVKSVEGA
DRVTQLDKTGYYVGFFASRNAKITVSHAKLTLSEAHSLPSAAYMTPSLKPRIEIMSSPVV
THRDSVFQLRTNGDGKLQVEEGNKPLLRQKTVQGGDVVAVPFHAGQPATTLKVTFTPENG
KPLTQEFAVRMARVSNPDALYVSPQGTAENDGSQAHPLDFALAVNLLAPGGTLWLADGDY
PASVIPATASGTLAKQKTLRPLGENAVFNGLKLEASFWNVQGITVTQKSFHIAGSHNHID
RVKAHHADDTGIWVASPDGIGRALWASHNLISNSESWGNQDPGRKNADGFAVKMRVGEGN
RLVNCYSHDNVDDGFDLFNKIEDGPNGSVTIENSLSVHNGSNGFKLGGEGLPVAHRVLNS
VAVENGMDGFTDNFNPGALYVEGNRAVDNKRFNFLFRPSPYTTADKQGVFRGNVSLRTSP
GKYDDSVSGNVDDSNYFYLNHKSVNTQKKEITPGDFISLRLPDPVIRLSDGGFNYADFLK
QK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtgggaacacaaactggcgattgtcgcgctgtccctggggataagcgcgcaatgcatc
gccgccgcattgcctgaaccggaaaatctgcgctggcacagcatcacttttggtcagtcc
accgacgtcaattttgccactaacgtattgcctgaaaaagtcggcatgaacgacgttcgc
acagcggatgacaaacccatcccggcggaaggtattgtgctgaccacgccgttcacgctg
gaaagccgcggcggcaaagtggggaacagccacgacggcctgacctatttctatacgcgt
ctgcccgcggaggcgaatttccagctggaagcggatatcacgctcgatcagtttggcccg
gaaaacggcgcgaaaccggccggtcaggaaggcgcgggattactggtgcgggacattctc
ggcgcgccgcgtgaacctgtcaccaaaccgggtattgaggaattaccggcggcgtcaaat
atggtgatgaacagcgtgatggcggtgggcgataagccgccggtcgtggcgctgatagca
cggcagggcgtgaaacagccctggggcaacaccggtatcggcattgtgcgcgaggaatat
catccgctgaccacgcccgcacatttctcgttgcggctgacgcggacggacagcggtttt
gatgtcgcctatgcgccgcagggcagcgatcagtggacggtaaaatccgttgaaggcgca
gaccgggtgacacagctggataaaaccgggtattacgtcggtttctttgcctcgcgcaat
gccaaaatcacggtcagccacgcgaaactgacactcagcgaagcgcattctttgccttct
gcggcttacatgacaccgtcacttaagccgcgtattgaaatcatgtcttcgccggtcgtt
acgcatcgcgacagtgttttccagctgcgcaccaacggcgacggcaagttgcaggtcgaa
gaaggcaataaaccgctgctgaggcagaaaaccgttcagggcggcgacgtggttgccgtg
ccgttccatgccggtcaacccgcaaccacactgaaagtgacgttcacgccggaaaacgga
aaaccgctgacgcaggaatttgcagttcgcatggcgcgggtcagcaatcctgatgcgctg
tatgtctcgccgcagggaacggctgaaaacgatggttcgcaggcgcatccgctggatttc
gccctcgcggtcaatctgttagcgccaggcggaaccttgtggctggcggacggggactat
ccggccagcgtgatcccggcaaccgccagcggcactctggcaaaacagaaaacgctgcgt
ccgctgggcgaaaatgcggtgtttaacggattaaaactcgaggccagtttctggaatgtg
cagggtattaccgttacgcagaaaagttttcatattgccggaagtcacaaccacatcgac
cgcgttaaggctcaccacgccgacgataccggcatctgggtcgcctcaccggacggcatt
ggccgcgcactgtgggccagccataacctgatcagcaattctgaatcctgggggaatcag
gatccgggacgcaaaaatgccgatggttttgcggtgaaaatgcgcgtgggcgagggcaac
cgcctggtgaattgttattcgcatgacaacgtggatgacggattcgatctgttcaacaaa
atcgaagacggcccgaacggcagtgtcacgattgaaaacagtttgtcagttcataacggc
agcaacggattcaaactcggtggcgaagggttgccggttgcgcaccgcgtgctgaacagc
gtggcggtagaaaacggcatggacggcttcaccgataacttcaaccccggcgcgctttac
gtggaaggcaaccgcgcggtagacaacaaacgcttcaacttcctgttccgtccgtcgccg
tacaccaccgcggataagcagggcgtgttcagaggcaatgtttcgctgcgcacctcgccg
ggtaaatatgacgattctgtcagcggtaatgtcgatgacagtaactatttttatctgaac
cataaaagtgtgaatacgcaaaaaaaagaaattacgccgggagattttatttctctccgg
ttgccggatccggttatccgtctttctgacggtggatttaattacgctgactttttgaaa
caaaaataa
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