Rahnella sikkimica: BV494_24650
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Entry
BV494_24650 CDS
T05331
Name
(GenBank) conjugative transfer relaxase/helicase TraI
Organism
rox
Rahnella sikkimica
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrwC
AAA_30
TraI_C
TraI_hel_assoc_N
TraI_2B
AAA_19
ssDNA_TraI_N
UvrD_C_2
Integrase_1
nSTAND_NTPase5
AAA_11
PhoH
Motif
Other DBs
NCBI-ProteinID:
AVF38090
UniProt:
A0A2L1UYT4
LinkDB
All DBs
Position
unnamed2:132033..137201
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AA seq
1722 aa
AA seq
DB search
MMSISPIAGDAGYYASQDNYYVLGSLESRWLGKGAENLGLTGALLDAEMNAMKDGVLPDG
SVLSRVENGKETHRPGYDLTFSAPKSVSMMALIGGDRRFIDAHNRAVDTVMKEVEALASA
RITEGGQTQTVLTGNIVAALYNHDTSRDLDPQLHTHALVFNATEADGKWRALASDTKMKT
GFSETMYANQVALGNIYRHALRQDIESMGFDTVNTGKNGLWEIKDVPVEPFSQRSQAINA
VAGDDASLKSRDIAALDTRKAKVASDPLVLVAEWNQRLKETGFNLPDFVGRAKARELRGP
ETPEPAASAVDMAGAISSAISTLSENKVQFTYSELLAKTASQLPAEPGLFALVREGIDTA
IEQQRLIPLDKEKGIFTSDVHLLNELSVHQLAKTAMQENRVLSFPDRAVERPRAYGDAYS
VLSQDNAPVAILSGRGGAAQLRERIADAAIMAGEKGRDITIIAADNRGRDYLSQEPLLTG
KVMSRSALMADLTLSPQSTLVIAQAEKLSLKETLLILEKGQAQGVQMLFIDSENRTGTGN
ALSVLKDAGVPQYKFYDSQKIPTTVVSEGDKRLRYGRLAQDYAALKAEGRPVVAQASGPR
EQVLLNTAIRTELQATGQLGKDERQLSVIQPVWLDGKTRNQRDSYRAGMVMEQWDRETKT
MSRYSIDRVTDSTNTLRLISETGEVRVEKISGLDSSWSAYTSKTIPVAVGEPLMAVGREL
EGKIKSRDGLIVSGFVDGGVVVSKGDTSLVLDTTQALKLASPLVEGLGVSVGDNQTVLVA
AGLRDMNGAALNQVARSGNKATLYTALPQDRAAKRLTSNPNFRVASEQVKGVAGELNLDA
AMQKNRDALRTPVAQSVALGLSRAQSNSIAFSKANLISASLGWSPDVTVSQVDAEVDRQV
KNGDLISLSPVAGAGSGLLVPRVTYEMEKSIIRTVAEGKNAVAPLMERVPDKYLAELTGG
QQAATKLILERPDRFVAIQGYAGTGKTTQFKAVMAALDSLPENQRPQVIGLAPTHRAVHE
MQSVGVRAQTLSSFLSEERQKAMAGEKTGYGNTLFLVDESSMVGNRDMAELYQRVAATGG
RAISSGDVAQLQSIEPGQPFRLVQQRSAIDTVVMQDIVRQTPELRPAIYSMIEGNPREAL
EKVEAVTPAQIFRKMDAWAPSFSVMEIKSAKEDEKEAAVQGDDPADVIDAITRDFAGRTP
QTQAQTLVVAHLNADRHAINSRIHDALHKNGELGKSELTLTVLEPARVPDKALRSATGFI
DHIGHVAVMDNRHMTVSSVDTAQGLMTLTDDTGKPTVISNFENSTQDISLYAPREITVST
GDRMRFTRSDNERGYVANSQWQVSRLENSGRITLSNGEQEKMLEPGRLPEDGHIDLAYAV
TAHGAQGASERYVITLEGTKGGRKRMATREAGYVTLSRAKEHVQVYTDDREGWLKQLDRQ
SARHSAHDLLHHDTDRAALVAEKLLSTATPLQDTPLGRKLLQTRGLDAGESMAKFIAPGK
KYPQPHIALPVWDSNGRRAGVYLDELRFMPQGGGAWLSNEPRIMGSEDARFAGLQASRNG
DTHVAGSIQEGQVLAHQYPDSGVLVRLSGEGMPHNLPRVTGTTLATDAETLRQALPSDGE
PLPFIPMHDEKQQAALEKALHAAAALPEDEKLRLAAEAARAGLAKSGPEPDEKTLSEAAG
KRTDLPDLTADPAVMQIAAKERAATRLQQMERDIVIEKTFGE
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atgatgagcatcagtccgattgccggcgatgccggctactacgcaagtcaggataattac
tacgtactcggcagcctcgagtcccgctggctgggcaagggcgctgaaaacctggggctg
accggagcgctgctggacgccgagatgaacgccatgaaggacggcgtactgcccgatggt
tcggtgctgtcgcgcgttgaaaacggtaaagagacgcaccgtcccggctatgacctgacg
ttttcggcgcctaaaagtgtgtcgatgatggctctcatcggcggcgaccggcggtttatt
gacgcgcacaaccgcgcggttgataccgtgatgaaggaggttgaagcgctggccagcgcg
cgtattaccgaaggtggtcagacgcagaccgtgctgaccggcaatattgttgccgcgctc
tataaccacgatacctcccgcgacttagacccgcagctgcacacccacgcgctggtattt
aacgccaccgaagccgacgggaaatggcgggcactggccagcgacaccaaaatgaaaacc
ggcttttccgagacgatgtatgccaatcaggtagccctgggaaacatctaccgtcacgcc
ctgcgtcaggatatcgaaagcatgggttttgacaccgttaatacgggtaaaaacgggctg
tgggagattaaggatgtaccggttgagccgttctcacagcgcagccaggccattaacgcg
gtcgccggtgacgatgcttctttaaagtcccgtgatatcgccgcgctcgatacccggaag
gccaaagtggcctccgacccgctggtactggtggcggaatggaatcaaaggctgaaagaa
accggctttaacctgccggactttgtcgggcgggcgaaagcgcgcgagctccgcgggccg
gagacccctgaacctgcagcaagtgcggtggacatggccggcgccatcagcagtgccatt
tctacgctcagtgaaaacaaggtgcagtttacctactctgaactgctggctaaaaccgct
tcgcagttgcccgctgaacccggtctttttgcactggtgcgtgagggcatagataccgcc
attgaacagcagcgtctcattccgctggataaggagaagggcattttcacctctgatgtc
catctgctgaacgaactgagtgtgcatcagctggcgaaaaccgcgatgcaggaaaatcgc
gtattgtctttcccggaccgcgccgttgagcgtccgcgagcctacggcgacgcttactct
gttttatctcaggacaatgcgccggtggctattctctctgggcgcggcggtgcagcgcag
ctacgtgagcgcattgctgatgcggccatcatggcgggtgagaaagggcgcgatatcacc
atcattgccgcggataaccgcggccgggactacctgtcacaggagccgctgctgaccggc
aaagtgatgtcccgcagcgcgctgatggcagacctgacgctgtccccgcaaagcacactg
gttatcgctcaggcggaaaaactctccctgaaagaaacgctgctgatactggaaaaaggt
caggcacagggagtgcagatgctgtttattgactcggaaaaccgcaccggcaccggcaat
gcgctgtcggtgctcaaagacgctggtgtgccgcagtacaagttctatgacagtcagaaa
atccccaccactgtggtgagcgaaggcgataaacgcctgcggtatggccgtctggctcag
gactatgctgccctcaaagccgaaggtcggccggtggtggcacaggccagcggtccgcgc
gaacaggtgttgctcaatacggctatccggacagaactgcaggcgacgggtcagttgggt
aaagacgagcgacaactttctgttattcagccggtgtggctggatggcaaaacccgcaat
cagcgcgacagctaccgcgcgggtatggtgatggagcagtgggacagggaaacgaaaacg
atgtcccgttacagcattgaccgcgtcaccgacagcaccaacaccctgcgcctgatttca
gaaaccggcgaggtgcgtgtggagaaaatcagcggactcgacagcagctggagtgcctac
acgagtaaaacgattccggtcgccgttggcgaaccgctgatggccgtcggccgcgagctg
gaaggcaaaattaaatcgcgggatggtctgatagtcagcggttttgtggacggcggggtc
gtagtcagtaaaggggatacatcgctggttctggacaccacacaagccctgaaactggcc
tctccgctggtggaggggctgggcgtgagcgtgggcgacaaccagaccgtgctggtcgcc
gccggtcttcgcgatatgaacggcgccgcactcaaccaggttgcccgcagcggaaataag
gccacgctgtacactgcgctgccgcaggacagggcggcgaagcggctgaccagcaatccc
aacttcagggtggccagcgaacaggtgaaaggggtagccggtgagctaaacctcgatgct
gccatgcagaaaaatcgcgacgcgctgcgcacgccggtggcgcagtcggtcgcgctgggt
ctgagccgggcgcagtcaaacagtattgctttcagcaaggcgaacctgatttccgcctcg
cttggctggtcgccggacgtcacggtgtctcaggtcgacgctgaagtcgaccgccaagtt
aaaaacggtgacctgatcagtctgtcaccggtcgctggagccggcagcgggcttcttgtg
ccgcgcgtcacctatgagatggagaaatccatcatccgcaccgtcgcggagggcaaaaat
gccgtcgcgccgctgatggaaagggtgccggacaaatatctcgccgagctgaccggcggt
cagcaggctgccaccaagctcattctcgaaaggccagaccgatttgtggccattcagggc
tacgccggaacagggaaaactacgcagtttaaagccgtgatggcggcgctcgacagcctg
ccagaaaatcagcggccgcaggttatcggcctggctccgacccatcgcgccgtccatgaa
atgcagtccgtcggcgtacgtgcgcagacgctgtcatcgtttctgagcgaggagcgtcag
aaagccatggccggtgaaaagaccggttacggcaacacgttgttcctggtcgatgagtcc
tcaatggtgggcaaccgcgacatggcggaactttaccagcgcgtggcggccaccggcggc
cgggccatcagcagcggtgacgttgcgcagctgcagtccatcgaacccggacaaccgttc
cggttagtgcagcaacgcagtgccatcgacaccgtcgtgatgcaggacattgtgcgtcag
acacctgagctgcggccagctatctacagcatgattgaaggcaatccacgtgaggcgctg
gagaaggtggaggccgtcacgccagcgcagatattccgtaaaatggacgcctgggcgccg
tcgttttcagtgatggaaattaagtcagcaaaagaagatgaaaaagaagcggcagttcag
ggggatgaccctgccgacgtcattgacgccatcacccgtgactttgccggacgtacgcca
caaacgcaggcgcaaacgctggtggttgcccacctgaacgccgacaggcacgccatcaac
agtcgtattcatgacgcgctgcataaaaacggtgagttggggaaaagtgaactgaccctg
accgtgctggagcctgcgcgcgtaccggacaaggcgctgcgcagcgcgacgggttttatt
gaccatatcgggcacgttgctgtgatggataaccggcatatgacggtgagtagcgtggac
actgcacagggactgatgaccctgactgacgataccggcaaaccgacggtcatatcaaac
ttcgaaaatagcacgcaggacatctcactgtacgccccccgcgagattaccgtcagtact
ggcgaccgcatgcgcttcacccgcagcgataacgaacggggctacgtggccaacagtcag
tggcaggtgagcaggctggaaaatagcgggcgcattacgctgagtaacggcgaacaggaa
aagatgctggagccgggccggttgccggaagacgggcacattgacctggcgtatgcggtg
acggcgcacggggcgcagggtgccagcgagcggtatgtcattacccttgaagggactaaa
ggtggccgtaaaaggatggccacccgcgaggccgggtacgtgacactgtcgcgtgccaaa
gagcacgttcaggtttacaccgatgaccgtgaaggctggctgaagcagctcgaccggcag
tcagcacgccattcggcgcacgacctgctgcaccacgataccgaccgcgcagccctggtg
gccgagaagttgctgtccaccgccactccgctgcaggacacgccgcttggccggaaactg
ctgcaaacccgcggcctggatgcgggtgaatccatggcgaagtttatcgcccccggaaag
aaatacccgcaaccccatatcgcgctgcccgtctgggacagtaacggccggcgcgccggc
gtttatctcgatgagttgcgttttatgccacagggcggcggcgcctggctgagcaatgaa
ccccgcatcatgggcagtgaagacgcgcgctttgccggcctacaggccagccgcaacggc
gatacccacgtggccggcagcattcaggaagggcaggtgttagcccatcaatacccggac
agcggcgttctagtccggcttagcggagagggcatgccgcacaaccttccccgggtcacg
ggcacaacgctggctacggatgcggaaaccctgcgtcaggcactgccgtctgacggtgaa
cccctgccgtttatcccgatgcatgacgagaagcaacaggctgcgcttgagaaagcgctg
catgccgccgctgcgctgcccgaagacgagaaactgcgtcttgccgcggaagccgcgcgc
gccggactggcgaaatcaggacctgaaccggatgagaaaaccctgtctgaagcagcaggg
aagcggacagatctgccggatctgactgcggatcctgctgttatgcagatcgcggcgaag
gagcgggcggcaacccggttgcagcaaatggaacgggacatcgtcatcgagaagacgttt
ggcgaataa
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