Rhizobium oryzihabitans: G3A56_00345
Help
Entry
G3A56_00345 CDS
T06770
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
roy
Rhizobium oryzihabitans
Pathway
roy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
roy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G3A56_00345 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roy03021
]
G3A56_00345 (rpoC)
03400 DNA repair and recombination proteins [BR:
roy03400
]
G3A56_00345 (rpoC)
Enzymes [BR:
roy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G3A56_00345 (rpoC)
Transcription machinery [BR:
roy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G3A56_00345 (rpoC)
DNA repair and recombination proteins [BR:
roy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G3A56_00345 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QIB36641
UniProt:
A0A7L5BCS1
LinkDB
All DBs
Position
M15-11:56293..60501
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE
NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDVCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPDSKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVSGENIVKAGTLIDEADVAAIEKAGIQSVRIRSALTCEVQIGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN
ILRNSEGVLIAMGRNMSVTILDERGAERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIIIKDASG
AVAKLSRGGEARFHLSVDAILSVEPGSKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELDDNNDRLIEEGKKPAYGEPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILEERRK
GTGAGSANQMLQDMTDQVPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggtgcctgcgcagcatttcgattcc
atccggatttcgatcgcttcgccggaaaaaatcctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaactaccgtacgttcaagccggaacgcgacggtctcttctgcgcg
cgcatcttcggaccgatcaaggactatgagtgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgcagcgccggttgcccatatctggttcctgaagtcg
cttccctcgcgtatctcgaccctgctcgacatgacgctgaaggatgtcgagcgcgttctc
tatttcgagaactacatcgtcaccgaacccggcctcacttcgctgaagcagaaccagctt
ctgtccgaagaagagtacatgattgccgttgacgaattcggcgaagaccagttcaccgcc
atgatcggcgctgaagccatctacgagatgctggcttcgatgaacctcgaaaagatcgct
ggcgacctgcgtgccgaacttgctgagaccacgtctgatctcaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggagtccggcaaccgtccggaatggatgatc
atgaaggtcgttccggtcattccgccggacctgcgtccgctggttccgctcgatggcggc
cgttttgcgacgtctgaccttaacgatctctatcgtcgcgtcatcaaccgtaacaaccgt
ctgaagcgtctgatcgagcttcgtgcgcctggcatcatcatccgcaacgaaaagcgtatg
ttgcaggaatccgtcgatgcgctgttcgacaacggtcgtcgcggccgcgtcatcacgggt
gccaacaagcgtccgctgaagtcgctctccgacatgctcaagggcaagcagggccgcttc
cgccagaaccttcttggcaagcgcgtcgactattccggtcgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgcctcgacgccaagggttattcctcgaccgtcaagcaggccaag
aagctggttgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcttgaaccgcgcgccgacgctgcaccgtctgggtatccaggctttcgaa
cccatgctggtcgaaggcaaggccatccagctgcatccgctcgtctgcacggccttcaac
gccgactttgacggtgaccagatggctgttcacgttccgctctcgctggaagcccagctg
gaagcgcgcgtgctgatgatgtcgaccaacaacattctgcatccggcaaacggccacccg
atcatcgttccttcgcaggatatggttctcggcctgtattacctgtcgatcatgaaccag
aacgagccgggcgaaggcatggccttctcggatatcggcgaactgcatcacgcgcttgaa
aacaaggtcgtgacgctgcatgccaagattcgcggtcgcttcaagaccgtggatgccgat
ggcaagccggtttccaagatccatgaaacgacccctggccgtatgctgattggcgaactt
ctgccgaagaacgtcaacgtgcctttcgacgtctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcactgcggccagaaagacacggtcatcttc
tgcgaccgcatcatgcagctcggctttgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtcattccggacagcaaggtgaagatcgtcggtgacaccgaagccttg
gtgaaggaatacgaacagcagtacaatgatggtctcatcacccagggcgaaaagtacaac
aaggttgtcgacgcctggggcaaggctaccgaaaaggtcgccgaagaaatgatggcacgc
attaaggctgtcgagttcgatccggaaacgggccgccagaagccgatgaactccatctac
atgatgtcccactcgggcgcccgtggttctccgaaccagatgcgtcagctgggcggcatg
cgcggcctgatggcgaagccgtcgggtgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggtgcccgtaagggtctt
gcagacaccgctctgaagacggcgaactcgggttaccttacccgtcgtctcgtcgacgtc
gcgcaggattgcatcgtcaactccgtggattgcggcaccgacaagggcctcaccatgacc
gccatcgtcgatgccggtcaggtcgttgcctcgctgggcgcacgtatcctcggccgtacg
gctcttgatgacatcgatcatccggtttccggcgagaacatcgtcaaggccggcacgctt
atcgatgaggccgatgtggccgccatcgaaaaggcgggcatccagtccgttcgcatccgc
tctgctctgacctgcgaagtgcagatcggtgtctgcggcgtctgctacggtcgtgacctt
gcgcgcggtacgcctgtcaacatgggcgaagccgttggcgtcatcgccgcacagtcgatc
ggtgaaccgggcacgcagctcaccatgcgtacgttccaccttggtggtacggcgaacgtg
gtcgaccagtcgttcctcgaagcgtcgtatgaaggcacgatccagatcaagaaccgcaac
atcctgcggaactccgaaggcgttctcatcgccatgggccgtaacatgtccgttacgatc
cttgatgagcgcggcgcggaacgttcctcgcagcgtgtcgcttacggttcgaaaatcttc
gtggatgatggcgacaaggtgaagcgtggccagcgtcttgcagagtgggacccctacacc
cgtccgatgatgacggaagtggaaggtaccgttcacttcgaagacctcgtcgacggtctc
tccgttctggaagccaccgacgaatccaccggcatcaccaagcgtcaggtcattgactgg
cgttcgacgccgcgcggttcggacttgaagcccgcgatcatcatcaaggatgcttccggc
gctgtggcgaagcttagccgtggtggcgaagcccgcttccatctgtctgtggatgccatc
ctgtcggtcgagccgggttccaaggtctcccagggtgacgtgcttgcacgttcgccgctg
gaaagcgccaagacgaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gcccgtcgtccgaaggatcacgccatcatcgccgagatcgatggtacgatccgcctcggt
cgcgactacaagaacaagcgtcgcgtgatgatcgagcctgcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggaaggcgactacatcgag
aagggcgaatacattctcgacggcaacccggcgccgcacgacattctggcgatcaagggc
gtggaggctctggcttcctacctcgtgaacgaaatccaggaagtctaccgtctgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggttgaa
atcaccgatgctggcgacagccagtacatcgttggtgacaacgtcgatcgcatcgagctt
gacgacaacaacgaccgcctgatcgaagaaggtaagaagcctgcctatggcgagccggtt
ctgctcggcatcaccaaggcttcgctgcagacgccgtccttcatctcggccgcatcgttc
caggaaaccaccaaggttctcacggaagctgcgatcgccggcaagacggacacgctgcag
ggcctcaaggaaaacgtcatcgtcggccgcctcatccctgccggtactggcggcaccatg
acgcagatccgccgcatcgccacctcgcgcgacgacctcatcctcgaggaacgccgcaag
ggtacgggcgccggttccgcgaaccagatgctgcaggacatgacggaccaggttccggct
gcggaataa
DBGET
integrated database retrieval system
