Rhizobium oryzihabitans: G3A56_04395
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Entry
G3A56_04395 CDS
T06770
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
roy
Rhizobium oryzihabitans
Brite
KEGG Orthology (KO) [BR:
roy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
roy03032
]
G3A56_04395 (topA)
03400 DNA repair and recombination proteins [BR:
roy03400
]
G3A56_04395 (topA)
Enzymes [BR:
roy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
G3A56_04395 (topA)
DNA replication proteins [BR:
roy03032
]
Prokaryotic type
DNA Topoisomerases
G3A56_04395 (topA)
DNA repair and recombination proteins [BR:
roy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
G3A56_04395 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
QIB37327
UniProt:
A0A7L5BEK2
LinkDB
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Position
M15-11:797140..799824
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AA seq
894 aa
AA seq
DB search
MNVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMSWEVDSASAK
RMKDIADAVKSSDGLFLATDPDREGEAISWHVLDLLKKKRVLGDKPVKRVVFNAITKKAV
LDAMANPRDIDIPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
ESEIERFVSEEYWNISALLKTPRGDEFEAKLVSADGKRLQSRSIKTGEDANRLKALLEGA
TYVVDTVEAKPVKRNPGPPFTTSTLQQAASSRMGFSASRTMQVAQKLYEGIDIGGETVGL
ITYMRTDGVQMAPEAIDAARRAIGEQFGDRYVPEKARFYSTKAKNAQEAHEAIRPTDFNR
TPDQVKRYLDADQLRLYDLIWKRGIASQMASAEIERTTVEILADKNGEKAGLRAVGSVIR
FDGFIAAYTDQKEDGEQSDDGDDEGRLPQINARENLAKQKINASQHFTEPPPRYSEASLI
KKMEELGIGRPSTYAATLKTLSDREYIIVDKRKLIPHSRGRLVTAFLESFFSKYVEYDFT
AALEEKLDRISAGELDWKQVLRDFWKDFFAQIEDTKELRVTNVLDALNEVLAPLVFPKRE
DGSDPRICQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGSEAEAAASNEPKALG
ADPMTGEELTLRSGRFGPYIQRGEGKEAKRSSLPKGWKPEDIDHEKALALINLPRDIGKH
PETAKMISAGLGRYGPFLLHDGSYANLESIEDVFSIGLNRAVTVIAEKQSKGPGRGRSGT
PAALKELGDHPDGGPITVRDGRYGAYVNWGKVNATIPKGQDPASVTLDESLVLIAERIAK
TGTGGKPAKAKKPAAKKADGDAAAKPKATKAKAATKSKTAAKPKAAAKSKKAES
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgaatgtcgtcgtcgtagaatctccggccaaagccaagacgatcaacaagtatcttggt
cccggctacaaggttcttgcatcttttggccacgtccgggaccttcctgccaaggacgga
tcggtgctgcccgaccaggacttcgaaatgtcctgggaggtcgatagcgcgtccgccaag
cgcatgaaggacattgccgacgcggtgaaatcctccgacggcctgtttctcgcaaccgac
ccggatcgcgagggcgaagcgatttcctggcatgtgctcgatcttttgaagaagaagcgc
gttctcggcgacaagccggtgaagcgtgtggtcttcaacgccatcaccaaaaaggcggtg
ctggatgcgatggcgaacccacgcgacatcgacattccattggttgacgcctatctcgcc
cgccgcgcgctcgattatctcgtcggcttcaacctgtcgccggtgttgtggcgcaagctg
cccggcgcccgctcggccggacgtgtgcagtccgttgcactgcgtctcgtctgcgatcgt
gaatccgagatcgaacgtttcgtctccgaggaatactggaacatcagcgcgcttttgaag
acaccgcgcggtgacgagttcgaagccaagctggtttccgccgatggcaagcgcctgcaa
agccgctcgatcaagaccggtgaggacgccaaccgcctgaaggcgctgctcgaaggtgcg
acctatgtggtcgacaccgtcgaggcgaagcccgtcaagcgcaatcccggcccgcccttc
accacctcgacgttgcagcaggcggcgtcttcacgcatgggcttttcagcctcgcgcacc
atgcaggtggcacagaagctttatgaaggcatcgatatcggcggcgagaccgtcggtctg
atcacctatatgcgtaccgacggcgtgcagatggcgccggaagcgatcgacgccgcacgc
cgcgccattggcgagcagttcggcgaccgctatgtgccggaaaaggcgcgcttctattca
acgaaggcaaagaacgcccaggaagcgcacgaggcgatccgcccgaccgactttaaccgc
acgccggatcaggtgaagcgttaccttgatgccgaccagctgcgtctttacgacctgatc
tggaagcgcggcattgcaagccagatggcatctgccgaaatcgaacgtaccacggtggaa
attcttgccgacaagaacggcgaaaaggccggtcttcgtgccgtcggttcggtgatccgc
ttcgacggctttatcgccgcctataccgaccagaaggaagatggcgagcagagcgacgac
ggtgacgacgaaggccgcctgccacagatcaatgcgcgcgaaaacctcgccaagcagaag
atcaacgccagccagcactttaccgagccgccgccgcgttattcggaagcatcgctcatc
aagaagatggaagaactcggcatcggccgcccttccacctatgcggcgacgctgaagacg
ctgagcgaccgcgaatatataattgtcgacaagcgcaagctcataccgcattcgcgcgga
cgactggtgacggctttcctcgaaagcttcttctccaaatatgtcgaatacgacttcacc
gccgctctcgaagaaaagctcgaccgtatttccgcgggcgaactggactggaagcaggtg
ctgcgcgatttctggaaggatttcttcgcgcagatcgaagataccaaggaattgcgcgtc
accaacgtgctggatgcgctgaatgaggttctggcgccgctggtgttccccaagcgcgag
gatgggtcggatccgcgcatctgtcaggtttgcggcaccggcaatctctcgctgaagctc
ggcaaatatggcgctttcgtcggttgctcgaactatcctgaatgcaactatacgcgccag
ctcacctccgatggttcggaagccgaagctgcggcctcgaacgagccgaaggcgctcggc
gccgatccgatgaccggtgaagagttgacgctgcgctcgggccgtttcggaccctatatc
cagcgcggcgaaggcaaggaagccaagcgctcttcgctgcccaagggctggaagcctgag
gacatcgaccacgaaaaggccttggcgctcatcaacctgccgcgcgatatcggcaaacat
ccggaaacggctaagatgatttccgccggcctcggccgctacggacctttcctgttgcat
gacggttcctatgcgaaccttgaaagcattgaggacgtgttctcgatcggtctcaaccgc
gccgtcaccgttattgccgaaaagcagagcaagggaccgggacgcggccgcagcggcacg
ccggcagcgctgaaggaactgggtgaccatcccgatggcggtccgattaccgtccgcgac
gggcgttacggtgcttacgtcaactggggcaaggtcaacgccaccattccaaaggggcag
gacccggcgtcggtgacgctggacgagtccctggtgctgatcgccgagcgcatcgccaag
accggaaccggcggcaagcccgccaaggccaagaaacctgccgccaagaaggccgatggc
gatgccgccgcaaagccgaaggcgacgaaagccaaggccgcaacaaagagcaagacggct
gccaagccgaaggccgcagccaaatccaagaaggcagaatcgtga
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