Rhizobium oryzihabitans: G3A56_11355
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Entry
G3A56_11355 CDS
T06770
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
roy
Rhizobium oryzihabitans
Brite
KEGG Orthology (KO) [BR:
roy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roy03019
]
G3A56_11355 (hrpB)
Enzymes [BR:
roy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
G3A56_11355 (hrpB)
Messenger RNA biogenesis [BR:
roy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
G3A56_11355 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
ResIII
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QIB38514
UniProt:
A0A7L5BHX5
LinkDB
All DBs
Position
M15-11:2179980..2182466
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AA seq
828 aa
AA seq
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MTKTPAFIKTDLPELPVSDVLADIADALGGAKRAVLSAPPGAGKTTLVPLHLLQEEWRGD
GKIILLEPRRLATRAAAGRMADLLHEDVGETVGYRMRLDNRISSRTRIEVVTEGVFARMV
LDDPELAGVSTVIFDEFHERSLDGDFGLALALDVQEGLRDDLRILVMSATLDVDRISTLM
GDAPVIQSLGRTFPIDIRYEDRWQGVPVEEKVTKAITEAHAAETGSILAFLPGQAEITRT
AARLEGRFSADTDIIPLYGNLSQKEQDAAIKPAPAGRRKIVLATSIAETSITIDGVRVVI
DSGLQRLPVFEPATGITRLETVRVSRASADQRAGRAGRTEPGVAVRLWHQGQMAALNAFT
PPQILASDLSGLALDLAHWGVHDPSALAFLDAPPEAALKESIALLKNLGALDEAGSLTQR
GHLMRGLSLPPRLAAMVIAATGEGAGKKAAMLAVMLTEQGLGGNDIDLDERLRRFLSEKN
ERAQAARKLASRLFDTIGGAKAAIELPSEAGPLLLHAYPDRIALQRGARGRYVMANGRGA
ELAETDRLAASRMLVVADITGRAAQPRILSAAGIERADIEERMPHLIVQQDQLLFDKASG
QARARRVTRLGAIILDETPLPRPEDEQAAQALANGVREYGIGILPFSKETLQLRDRIGFL
SASIGEPWPDVSDAALLLRLDEWFVPFQHGARSLQDIRPGSLSEGLLSLVPYEVARDLGR
LAPTHFEAPTGQRHPIRYDASEPTLSIRVQELFGLTAHPAIAQGRLPLLLELTSPAHRPI
QTTRDLPGFWAGSWKDVRADMRGRYPRHPWPEDPASALPTSRAKPRGT
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaaacgccagcctttataaagacggatctgcccgaacttcccgtcagcgacgtt
ctggcagatatcgccgatgcgcttgggggagcaaagcgtgcggttctttcagctccgccg
ggcgcgggcaaaaccacgctggtgccgcttcatctcttgcaagaggaatggcggggtgac
ggcaagatcattcttctcgaaccacgtcggcttgcgacccgcgccgccgccgggcgcatg
gccgatctgctacatgaggatgtcggggaaaccgtcggctaccgcatgcggctcgacaat
cgcatctcctcaaggacccggattgaagtggtgacggagggcgtgttcgcccgaatggtt
cttgacgacccggaacttgccggcgtttcgacggtgattttcgacgagtttcacgaacgt
tcgctcgacggcgatttcggactggcgcttgcgctcgacgtgcaggaagggttgcgagat
gatctgcgcatcctcgtcatgtccgccaccctcgatgtggaccgcatcagcacgctgatg
ggtgacgccccggtcattcagagcctgggtcggacatttccgatcgatatccgctacgag
gaccgctggcagggtgtacccgtcgaagagaaagtcacaaaggcgattaccgaagcccat
gcagcggaaacgggctccatcctcgccttcctgccggggcaagcggaaatcacccgcacg
gccgcacggctggaggggcgtttttccgcagatacggatatcatcccgctttacggcaat
ctttcgcaaaaggagcaggatgcggcgatcaagccggcaccggccggacggcgcaagatc
gtgcttgccacctctatcgccgaaacctcgatcaccatagacggcgtgcgcgtggtgatc
gacagcgggttgcagcgactgccggtcttcgaaccggcaacgggcataacgaggctggag
actgtgcgagtttcgcgggcttccgccgatcagcgggcgggccgcgctgggcgaacggag
cccggcgttgcggtccgtctttggcatcaagggcagatggcggcgctcaacgccttcaca
ccaccgcaaattctggcgagcgacctttccggcctggcgcttgatcttgcccattggggc
gttcacgatccgtctgcgcttgcatttctggacgcccctcccgaagcggcgctgaaggaa
tccatcgcgcttctcaaaaatctcggcgcactcgatgaagccggatcactgacgcaacgc
ggccacctcatgcgcggcctctcattgccgccgcgactggcggccatggtgattgccgcg
acgggtgaaggtgcgggaaaaaaggcggcgatgctcgccgtcatgctgaccgaacagggt
ctcggcggaaacgacattgatctcgatgaacgattgcggcgctttctttccgagaagaac
gagagggcacaggcggcccgcaagctggcgtcgaggcttttcgatacgatcggcggtgcg
aaggcagcaatcgaattgccgagcgaggctggtcccctgctgctgcatgcctatcctgac
cggattgcgcttcagcgtggagcacgcggccgttacgtgatggcgaacggccggggtgct
gaactcgccgagaccgaccggcttgccgcaagcaggatgctggtggttgccgacatcacc
gggcgggcggcgcagccgcgcatcctttcagctgccggcatcgagcgggccgatatagaa
gagcgaatgccgcatcttatcgtgcagcaggaccagctgctgttcgacaaggcgagcggc
caggcgcgtgcacgccgcgtcacgcgcctcggcgccatcatactcgacgaaacgccccta
ccccgtcccgaagacgaacaggcggcgcaggcgctcgccaacggcgttcgggaatacggc
atcggcattcttcctttttcgaaagagacccttcagctgcgtgacaggatcggctttctg
agcgccagcatcggagagccttggccggacgtcagcgatgcggcattgcttttgcgactg
gatgaatggttcgtgcccttccagcacggcgcacgcagcctgcaggatatccggcccggc
agcctctccgagggacttttatccttggtgccctatgaggtcgcgcgcgatctcggcagg
cttgcgccgacgcatttcgaagcaccgacgggccagcggcatcccatccgctacgacgcc
agcgaaccgacgctttccattcgcgtgcaggagcttttcgggctgacggcccaccctgcc
atcgcgcagggacgattgccgctgcttctggaattgacctcgccggcgcacaggccgata
cagacgacacgcgatcttcccggtttctgggcgggatcgtggaaggacgtgcgggcggat
atgcgcgggcgttatccgcgccatccatggccggaagatcccgcatcggcattgccgacc
agccgcgccaaaccgcggggaacgtga
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