Rhizobium oryzihabitans: G3A56_23030
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Entry
G3A56_23030 CDS
T06770
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
roy
Rhizobium oryzihabitans
Pathway
roy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G3A56_23030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roy03019
]
G3A56_23030
03009 Ribosome biogenesis [BR:
roy03009
]
G3A56_23030
Enzymes [BR:
roy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G3A56_23030
Messenger RNA biogenesis [BR:
roy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G3A56_23030
Ribosome biogenesis [BR:
roy03009
]
Prokaryotic type
rRNA helicases
G3A56_23030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Pan_kinase
CMS1
SBF_like
Motif
Other DBs
NCBI-ProteinID:
QIB40715
UniProt:
A0A7L5BPP0
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All DBs
Position
M15-12:complement(1354009..1355856)
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AA seq
615 aa
AA seq
DB search
MTDTQGIAPAIAQALEKRGYKDLTPVQQAMLSPELADKDALVSAQTGSGKTVAFGIALAT
TLLSENTRFGQASAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRSERRA
LERGAHIVVGTPGRLCDHIKRGALDLSSLRAVVLDEADEMLDLGFREDLEFILEESPDTR
RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVTGADRENAIINALR
FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAVVVPINQRRKAERLL
EGAKVSAAWVRPPSVEEIVERDGARLLADPSLTEAVAEDERDFVTQLLEQHGAEKVAAAF
VRLYHAGRSAPEDITEVALDNTRKPRRDSFEPVENNAPRRERSDFSDSAWFSLSVGRKQS
AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMMLEKGIRLK
ALEGKPEMTGNVREDTRPAKAQRKFTKSDNASAPRDDRKAEDKPWKKKKAFGDKPKFEGK
KDKPFEKRGPKPTKG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacccagggtatcgccccggcgatcgcgcaggcgttggaaaaacgcggctac
aaagacttgacccccgtgcagcaggcaatgctgtcgccggaactcgccgacaaggacgcg
ctggtttccgcgcagaccggctccggcaagacggttgccttcggcatcgcgcttgcgacc
acgctgctttcggaaaacacccgtttcggtcaggcttccgcaccgctggcgcttgccatc
gcgccgacccgtgaactggccatgcaggtcaagcgcgagctggaatggctttatgaattc
gccggcgtgtcgatcgcctcctgcgtcggcggcatggatatccgcagcgaacgccgggcg
ctggagcgcggtgcgcatattgtcgtcggcacacccggccgcctctgtgaccacatcaag
cgcggcgcgctcgatctgtcgtcgctgcgggccgtcgttcttgatgaggccgacgaaatg
ctcgacctcggtttccgcgaggatctggaattcattctggaagaatcgccggatacccgc
cgcacgctgatgttctcggccaccgttccgcgcagcatcgccaagcttgcagaaagctac
cagaaaaatgccgtgcgcatcgccaccgcttccgaacagaagcagcatgtggatatcgaa
tatcgcgccctgctggtaacgggtgcggaccgcgagaacgccatcatcaacgcgctgcgt
ttttacgaagcccgcaacgccatcgtgttctgctccacccgcgctgccgtcaaccatctg
acggcccgcttgaacaatcgcggcttttcggtcgtggcgctctccggtgagctcacccag
aacgagcgcacccacgcgctgcaggccatgcgtgacggccgcgcccgtgtttgcgtggca
accgacgttgccgcacgcggcatcgacctgccgggtctcgaacttgtcatccacgccgac
ctgccgaccaactcggaaacgcttctccaccgttccggccgtaccggccgtgccggacag
aagggcgtcagcgccgtcgtggtgccgatcaaccagcgccgcaaggcagaacgccttctc
gagggcgccaaggtcagcgcggcatgggttcgcccgccgtccgttgaagaaatcgtcgag
cgcgacggcgcccgtcttctggccgatccttcgctgaccgaggccgtggccgaggacgaa
cgcgatttcgtcacccagctgcttgagcagcacggtgcggagaaagtcgccgccgccttc
gtgcgtctttaccatgccggacgctccgctccggaggacatcacggaagtcgcgctggac
aatacccgcaaaccgcgtcgcgacagtttcgaaccggtcgaaaacaatgcgccgcgccgc
gaacggtcggatttctccgacagcgcatggttttcgctgtccgtcggccgcaagcagagc
gccgagccgcgctggctcatccccatgctctgccgtttcggcaagatcacccgtcaggat
atcggcgccatccgcatgcagcagacggagaccttcgtggaactggcggccgatgccgtt
gatcgtttcacctccgccatcggcaaggacatgatgcttgagaagggcattcgcctgaag
gcgctcgaaggcaagccggaaatgaccggcaacgtccgcgaagacacccgcccggccaag
gcccagcgcaaattcaccaaatcggacaatgcaagcgcaccgcgcgatgaccgcaaggct
gaggacaagccctggaaaaagaaaaaggccttcggcgacaagccgaaattcgaaggcaag
aaagacaagccctttgaaaagcgcgggccgaagcccacaaagggttga
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