Rhodococcus oxybenzonivorans: CBI38_07005
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Entry
CBI38_07005 CDS
T08279
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CBI38_07005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roz03400
]
CBI38_07005
Enzymes [BR:
roz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CBI38_07005
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CBI38_07005
DNA repair and recombination proteins [BR:
roz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CBI38_07005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AWK71365
UniProt:
A0A2S2BRW6
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All DBs
Position
1467879..1468745
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AA seq
288 aa
AA seq
DB search
MPELPEVEALAEFLRKHAVGAVVGRVDVAALSVLKTFDPPITALQGRDVTGAARFGKHLA
LDGDGVWLVTHLSRGGWLRWTDNPSAAPPKPGKGPLALRLHFFTPEGATPAFDLTEAGTK
KRLAVWVVHDPQEVEGIARLGPDALEVTEPEFAALLETSSARIKNALVDQSLLAGVGNAY
SDEILHTAKISPFATAKTLPEDSVHILYDTMRTVLTDAVERSLGQDAARLKGEKRSGMRV
HARTGLPCPVCGDTVREVSFAEKSFQYCATCQTGGKVLADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctgccggaggtggaggcgttagccgagttcctgcggaaacacgccgtggga
gcggtcgtcggacgggtggacgtggccgcgctgagtgttctgaagacgttcgacccgccg
atcacggcgttgcagggccgggatgtgacgggtgctgcgcgtttcggtaagcacctggcc
ctcgacggcgacggggtgtggttggtcacgcatctctcccgcggaggatggttgcgctgg
accgacaacccgtcggccgccccgccgaagccggggaagggtccgctcgcgttgcggctc
cacttcttcactccggagggggcgacaccggcgttcgacctcaccgaggcgggaacgaag
aagcggctcgcggtgtgggtggtgcacgacccgcaggaagtggaggggatcgcgcgactc
ggccccgacgccctggaggttaccgaaccggagttcgccgcgctgctcgagacctcctca
gcgcggataaagaacgccctggtcgatcagtctctgctggccggcgtgggcaatgcgtac
tcggacgaaatactccacacggcgaagatctcaccgttcgcgacggcgaagacactgccg
gaggattccgtccacattctgtacgacacgatgcgcacggtgctgaccgatgccgtcgaa
cggtcactcggtcaggatgccgcgcggctcaagggggagaagagatccggtatgcgggtg
cacgcgcgcacaggtctgccctgcccggtgtgcggcgacacggtccgggaagtgtcgttc
gcggagaagtcttttcagtactgtgccacctgtcagaccggcggcaaggtgctcgcggat
cggcggatgtccaggctgctgaagtag
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