Rhodococcus oxybenzonivorans: CBI38_08965
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Entry
CBI38_08965 CDS
T08279
Name
(GenBank) AAA family ATPase
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CBI38_08965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roz03400
]
CBI38_08965
Enzymes [BR:
roz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CBI38_08965
DNA repair and recombination proteins [BR:
roz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CBI38_08965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
ResIII
DUF6003
Motif
Other DBs
NCBI-ProteinID:
AWK75425
UniProt:
A0A2S2C3H9
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All DBs
Position
1877702..1881025
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AA seq
1107 aa
AA seq
DB search
MTDTRGFDLLGPLPSGTTVLEASAGTGKTYAIVGLAARFVAEGGIDLSRLLLVTFSRAAT
QELRERTRERFRSVATELADPRQALRGEDQVIRHLADADPEEVALRRRRLLQALSDFDAA
TIVTTHSFCQRMLDGLGIAGERDPDAVLVEAADDLVTEVIDDLYLSAYSRAESAPFTPAE
ATAAARAAIFDPQAVLAPEDARGTPAGERVAFAEAVRGEVECRKRAVGLRDFDDLPALLH
RVLTHPEHGEAACRRVRDRYDVVLVDEFQDTDPLQWDILGRTFHGGGQASRHRAGTLVLV
GDPKQAIYAFRGAEVLSYLDAVQSADSHEELVTNWRSDQELLDALEYLHGGAALGHPDIV
VHRVDGARPKSRLTGAAPLRLRYLPRTGAGAINKSGYPAVGPLRNRVAADLAADIVRTLD
GGVTLDIGGVSRAVQPGDIAVLVRTNAQITLVHDALDRAGVPSVLAGGASVFTTPAAQHW
LWVLQALEQPHRSDRVRLAALTPLLGHTAEELDARGDDIVAEVGGLLRELASVFALSGFA
ALFERLAAIRRLEARLLAVSAGERALTDLRHVAQLLNGAAVEQSLGLTAITRWLTERMKD
PSSGGVDRSRRLDSDAAAVQIATVHASKGLEFPLVYLPYAWDAAKNPKPNKLLLHDDNGR
RILDVGGPNSPGYAERKSRHDAEEAGEELRLLYVALTRAMCGLVLWWAPAFSTAGAPLHR
MILGRAPGQRDVPQKANVPEDPVVADRLSAWGAGGPDTVHVEPVGSEAVPPAQWSPLKES
GGDLEAARFQRLLDTRWRRTSYSALTASAHESPAVGSEAEVDVKADEPDEPPLHAPEDGG
TGLASTMNDLPGGATFGTLVHAVFEVVDTTASDLESELVRCCTEVIASTMSEIDPARLAA
ALLPVLHTPLGSAAARTLAELAPADLLAELEFELPLAGGDTPSLTVMLDGVGRLLRTHLA
ADDPLWPYADAVTTLEPTPLRGYLTGSIDAVIRLPGPRYIVVDYKTNRLAQGELTTAHYT
RERMATEMIRSHYPLQALLYSVALHRYLRWRQPGYDPALHLAGVQYLFVRGMVGPDTPPG
CGVFDWTPPAALVTELSDLLSGIEATP
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacccgggggttcgatctgctcggaccgttgccgtcgggcaccaccgtgctc
gaggccagcgctgggacggggaagacctacgcgatcgtgggactcgccgcccgcttcgtc
gcggaaggtggaatcgacctctcgcgactcctgctggtcaccttcagccgcgcggcgacc
caggaactgcgcgagcgcacccgggaacgctttcgcagtgtggcaacagaattggccgat
cctcggcaggccctccgcggcgaggatcaggtcatccggcacctggccgacgccgacccc
gaggaggtggcactgcgacgtcgacgacttctccaggctctgtccgacttcgatgcggcc
accatcgtcaccacccacagcttctgccagcgcatgctcgacggcctcggcatcgccggt
gaacgggaccccgacgcggtgctcgtcgaggccgccgacgacctcgtcaccgaggtgatc
gacgacctctacctcagcgcctacagccgtgccgagtccgcaccgttcaccccggcggaa
gccaccgccgccgcacgggccgccatcttcgatccccaggccgtgctcgcaccggaagac
gcgcgcggcacccccgcaggcgaacgggttgcgttcgccgaggcggtacgcggcgaggtg
gaatgtcgcaaacgcgctgtgggactgcgtgacttcgacgatctgccagctctcctccat
cgcgtactcacccatcccgaacacggtgaggccgcctgccggcgagtgcgggaccggtac
gacgtcgtcctcgtcgacgagtttcaggacaccgatccgctgcaatgggacatcctcggc
agaacctttcacgggggcggtcaggcttcgcggcaccgcgcgggaacgttggtgctcgtc
ggtgatccgaagcaggcgatctacgcgttccggggggccgaggtactcagctacctcgac
gcagtccagtcggccgacagccacgaggaactggtcaccaactggcgcagcgatcaggaa
ctgctcgacgcactggagtacctccacggaggagccgccctcggccatcccgacatcgtg
gtgcaccgggtggacggcgctcgaccgaagtcgcggctcaccggggcggcaccgctgcgt
ctgcgttacctgcctcgcaccggcgcgggtgcgatcaacaaatcgggctaccccgccgtc
ggtccgctgcgcaaccgggtggccgccgacctcgcagcagacatcgtccgcaccctcgac
ggcggcgtcacactcgacatcggcggcgtgtcccgggcggttcagccgggcgacatcgcc
gttctggtgcggaccaacgcgcagatcaccctggtgcacgatgccctcgaccgcgccggg
gtcccgtcggtcctcgcaggcggagccagtgtgttcaccacacccgctgcgcagcactgg
ctgtgggttctgcaggcactcgagcaaccacaccgttccgatcgggtccggctcgccgcc
ctcacccccttgctcggacacaccgcggaggaactcgatgcccgaggtgacgacatcgtt
gccgaagtcggtgggttgctgcgtgaactcgcctcggtgttcgcgctgtccggtttcgcg
gccctcttcgaacgtctcgcggcgatcagacggctcgaggcccggttactggcagtctcc
gccggagagcgcgccctcaccgatctccgccatgtggcgcagttactcaacggtgccgcc
gtggagcagtccctcggcctcaccgcaatcacccgatggctcaccgaacggatgaaggac
ccgtcgtccggcggcgtcgaccgcagccgacgcctggacagcgatgccgcggcagtgcag
atcgcgaccgtccatgccagcaagggtctcgagtttccgctcgtctacctgccttacgcg
tgggatgctgcgaagaatccgaaaccgaataagctgctgctgcacgacgacaacgggcgg
cgcatcctcgacgtcggaggcccgaacagtccgggctatgcggaacgtaaaagcaggcac
gacgcggaagaagcgggcgaggagcttcgcctgctgtacgttgcgctcacccgggcgatg
tgcggtcttgtgctgtggtgggcgcccgcgttctcgactgcgggtgcgcccctgcaccgg
atgatcctcggccgcgcgccgggacagcgcgacgtgccacagaaagcgaacgttccggaa
gacccggtcgtcgccgatcggttgtcggcctggggtgccggcggtcccgacacggtgcac
gtcgagcccgtcggttccgaagcggtgccacccgcgcagtggtcaccgctcaaagagtcg
ggtggtgacctcgaggccgcccggttccagcgccttctcgacactcggtggcggcgaacc
tcgtactcggcgttgactgcgtccgcgcacgaaagcccggcagtgggcagcgaagcggag
gtcgacgtcaaggcggacgaaccagacgagccgccgctgcacgcgccggaagacgggggc
accggtctcgcctcgacgatgaacgacctccccggcggcgcgacattcggaaccctcgtc
cacgccgtgttcgaagtcgtcgacaccaccgcctccgacctcgaatccgaactcgtgcgc
tgttgcaccgaggtgatcgcgtcgaccatgtcggagatcgatccggcgcggctcgctgcc
gccctgctgcccgtactgcacacacccctcggatccgcggcggcacggacgctcgcggag
cttgcgcccgcagacctgctcgcggaactcgaattcgagcttccactcgccggcggagac
acaccctcgctcacggtgatgctcgacggcgtcggcagactgttgcgcacccaccttgcc
gccgacgatccgctgtggccgtacgcggatgccgtgaccactctggaacccacgccgttg
cgtggatacctcaccggcagtatcgatgccgtgatacggctgcccggccctcgctacatc
gtcgtcgactacaagacgaatcgactggcgcagggtgagttgaccaccgcccattacacg
cgggagcggatggccacggagatgatccggtcgcactatccgcttcaggcgctgctgtat
tctgttgcgctgcatcgctatttgcggtggcgtcagcccggctacgacccggccctacat
ctcgccggcgtgcaatatctgttcgtgcgcggaatggtcgggcccgacacgcccccggga
tgcggggtcttcgactggacgcccccagccgcgctggtgaccgaactgtccgacctgttg
tccgggatcgaggcgacgccatga
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