Rhodococcus oxybenzonivorans: CBI38_08970
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Entry
CBI38_08970 CDS
T08279
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CBI38_08970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roz03400
]
CBI38_08970
Enzymes [BR:
roz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CBI38_08970
DNA repair and recombination proteins [BR:
roz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CBI38_08970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
UvrD-helicase
Viral_helicase1
Helicase_RecD
AAA_22
SH3_13
PhoH
TraI_hel_assoc_N
AAA_24
AAA_16
nSTAND3
SLFN-g3_helicase
AAA_7
UvrD_C
ResIII
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
AWK71706
UniProt:
A0A2S2BSU9
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All DBs
Position
1881022..1882890
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AA seq
622 aa
AA seq
DB search
MTDVRVAQRGKGVLRIFNEAGVLAAADVHVALRLSALAGETSPDVYLATALAVRAVRAGS
VCLDLTRLREVTVDEESEVDLDDLPWPDDSTVIEALRRSPLVVGGPAGPLRPLRLVDTAE
GELLYLDRYFRQEETIRRVLDQRASGHPVVDEASLRRGLDTLFRDQNDPAGSSAPPDRQR
IAAAVAATHRTSVIVGGPGTGKTHTVARVLALLSMQTDRPRRIALAAPTGKAAARLQESV
RDQAGELGLPPDLTAMTLHRMLGWQRGRGSRFRYNADNHVPYDVIVVDETSMVSLTMMCR
LLEALRPDTQLVLVGDPDQLTSVDAGAVLADLVARPMSGKENPLLARLVGSDLDAADDPD
EAALSAAERDRLRGGVVRLSRGRRFGGGIAQLAVAVRDADEDRVMELLRSDAPEVSFHDI
DDLGALRKDVVDTAAGVTEAASGSDASAALQLSEAHRLLCAHREGPYGVAWWARQAMEWI
GEASGQRLDPDRWYPGQPLLVTANDHETRIYNGDTGVIVRRADDELVAAFARGNEPFLLH
PTHLSAVQTVYAMTIHRSQGSQYDTVSVVLPGAESSLLTRELLYTAITRARRHVRIIGTE
EAVRAGVQRRVLRASGLRRTFR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtccgggtagcccagcgcggcaagggtgtgctgcgaatcttcaacgaggca
ggagtgctcgcggctgcggatgtccatgtggcgctgcggttgtccgctctcgccggggag
acgtcgccggacgtctacctggccaccgccctcgcggtccgggcagtgcgggccggctcg
gtgtgcctcgatctgactcggctccgggaagtgacggtcgacgaggagtccgaggtcgac
ctggacgatctgccgtggccggacgactccacggtcatcgaggcgctgcgccgcagtccg
ctcgtcgtcggtggaccggccggaccgctgcgaccgctgcggctggtcgataccgctgaa
ggcgaattgctctacctcgaccggtatttccggcaggaggagacgatccgtcgcgtcctc
gaccagcgcgcttccgggcaccccgtcgtcgacgaagcatcactacgccgcgggttggac
actctgttccgcgatcagaacgatccggccggctcctcggccccgccggatcggcaacgg
atcgcagccgctgtcgccgcgacccaccggacctcggtgatcgtgggaggaccgggtacc
ggaaaaacgcacaccgtggcccgcgtgctggccctgctgtcgatgcagaccgaccgacca
cgacgcatcgccctcgccgcacccacgggcaaggcggcggctcggttgcaggaatcggtg
cgggatcaggcgggcgagctgggcttgccacccgatctgacagcgatgacgctgcaccgc
atgctgggctggcaacgcggacggggcagccgattccgctacaacgccgacaatcatgtg
ccctacgacgtgatcgtggtggacgagacctcgatggtgtcgttgaccatgatgtgccgg
ctcctcgaggcgcttcgtcccgacacacaactcgtgctcgtcggcgatcccgaccagttg
acgtccgtcgacgcgggcgcggtgctggccgacctggtggctcgacccatgtcggggaag
gagaatccgctactcgcacgtctggtcgggagtgacctggatgcggcggacgacccggac
gaggccgcgctgagtgcggcggaacgggatcggctgcgcgggggagtcgtgcggctcagc
cggggccgccgcttcggcggtggcatcgcccaactcgctgtcgcggtgcgagacgcggac
gaggaccgcgtgatggagttactgcgcagcgacgcacccgaggtgtcgttccacgacatc
gatgatctcggggcgctgcggaaggacgtggtcgacactgcagcgggtgtcaccgaggcc
gcgtcgggcagcgacgcctcggcggcactgcagctttcggaggcgcatcgcctgctctgt
gcgcaccgggagggtccgtacggtgtcgcatggtgggcgcggcaggccatggagtggatc
ggtgaggcctcagggcagcggctggacccggaccgctggtaccccggtcagccgcttctg
gtcacggccaacgatcacgagacgcgcatctacaacggtgacaccggggtgatcgtgcga
cgcgccgacgacgaactcgttgccgccttcgcgcgcggcaacgaaccctttctgttgcat
cccacgcacctgtcggcggtgcagaccgtctacgccatgacgattcaccgcagtcagggc
agtcagtacgacacggtgtccgtggtgctaccgggagcggagtcctcgttgctgacccgg
gaactgctgtatacggcgatcacgcgggcccgtcggcacgtgcggatcatcgggacagag
gaggcggtgcgggcgggtgtgcaacgccgggtgctgcgggcgagtgggctgcggcggacc
ttccggtag
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