Rhodococcus oxybenzonivorans: CBI38_10555
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Entry
CBI38_10555 CDS
T08279
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBI38_10555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
roz03021
]
CBI38_10555
03019 Messenger RNA biogenesis [BR:
roz03019
]
CBI38_10555
Transcription machinery [BR:
roz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CBI38_10555
Messenger RNA biogenesis [BR:
roz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CBI38_10555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
AWK71955
UniProt:
A0A2S2BTJ2
LinkDB
All DBs
Position
2212297..2214426
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AA seq
709 aa
AA seq
DB search
MTDTDLIAAPADASSVDTVGAQAGDSSQASSTAPENGAVTASTKRAEARRGAGLSGMVLT
ELRALAGELGIKGISGMRKGDLIAAIKDRQGASSAPAAATTEAAPRTRTSRTKREQPAQT
ALDVSPQQETAEKAAESKAPEPAVADGSAADTDVPEGGRRGRQRRGSSRRAGAPEQGDQA
DSGQDAPSQNAAVQNGVDTQQAERKQVDDRQDSAEKSGRQDGSGEQSGDRTRRERGDNRG
SDRGDRNDRGDTRERDRGDTRERDRDRGDRNQGSNNGPRTSDNRDNRGGDDEEGGRGRRG
RRFRERRRGRDRGEGGGGDVRETEIREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVY
VSMNLIRKNGLRRGDAITGAVRVAREGDQGNQRQKFNPLVRIDTVNGGDIEAAKKRPEFG
KLTPLYPNQRLRLETTPNILTTRVIDLVMPIGKGQRALIVSPPKAGKTSVLQAIANAIAT
NNPECYLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPPGDHTSVAELAIERAKRLVEAG
KDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIENGGSLTIIA
TAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLLSPDEA
AVLHKLRRVLSGLDSHQAIDLLIDRLKKSKSNLEFLMQVSKTAPGAIDD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatacggacctcatcgccgctcctgcggacgcctcctcggtggataccgttggc
gcgcaggcaggcgactcttcacaggcgtcatcgaccgcaccggaaaacggtgcagtgacg
gcctccacaaagcgcgccgaggcgcgccgaggtgccgggctgtccgggatggtgctgacc
gagctccgtgcccttgcgggcgagctcggtatcaaaggcatttcagggatgcgtaagggc
gacctgatcgccgcgatcaaggatcggcagggcgcctcgtcggcgccggccgctgcgacg
accgaggccgcgccccgcacccggacgtcccgcaccaagcgtgagcagcccgcgcagact
gccctcgacgtgtctccgcagcaggagaccgccgagaaggcggccgaaagcaaggcgccg
gaacctgcagtcgccgacggcagcgcggccgacaccgatgtccccgaggggggccgacgc
gggcgtcagcgccgtggctcctcccgccgggcaggtgcccctgagcagggcgaccaggcc
gacagcggacaggacgctccctcgcagaatgctgccgtccagaatggcgtcgacacccag
caggccgagcgcaagcaggtcgacgaccgtcaggacagtgcggaaaagtccggaaggcag
gacggctccggtgagcagtccggcgaccgcacgcggcgtgagcgtggggacaaccgcggc
agcgaccgtggtgaccggaacgaccgcggcgacacccgcgagcgggaccgcggtgacacg
cgcgaacgtgaccgcgaccggggtgatcgcaaccagggcagcaacaacggcccgcgcacg
agcgacaaccgtgacaaccggggcggcgacgacgaagaaggcggccgcggacgacgtgga
cggcgcttccgcgagcgtcgtcgtgggcgcgaccgcggcgaaggcggcggcggggacgtg
cgtgagacggagatccgggaagacgatgtcctgcagccggtagccggcatcctcgacgtc
ctcgacaactacgctttcgtgcggacgtccgggtacctcgcgggccccaacgacgtctac
gtgtcgatgaacctcatccgaaagaacggacttcgccgcggcgacgcgatcaccggtgcc
gtccgggttgcacgcgagggtgaccagggaaatcagcgccagaagttcaacccgttggtg
cggatcgacacggtcaacggcggcgacatcgaggcggcgaagaagcgccccgagttcggg
aagctcaccccgctgtacccgaatcagcggttgcgtctcgagaccacgccgaacatcctc
accacccgcgtcatcgatctcgtgatgccgatcggtaagggtcagcgcgcgctcatcgtg
agcccgccgaaggccggtaagaccagcgttctgcaggccatcgccaacgcgatcgcgacc
aacaaccccgagtgctacctgatggtcgtgctggtcgacgagcgtccagaagaggtcacc
gacatgcagcgatcggtcaagggtgaggtcatttcctcgaccttcgaccgcccgccggga
gaccacacctcggtcgccgagctcgccatcgagcgtgcgaagcgtctggtggaggccggt
aaggacgtcgtcgtccttctcgactcgatcactcgtctcggccgcgcgtacaacaactcg
tcgccggcgtcgggccgcatcctgtccggtggtgtcgactcgacagcgctgtacccgccg
aagcgtttcctcggtgcagcccgcaacatcgagaacggcggttcgctcacgatcatcgcg
acggccatggtcgagaccggttccaccggcgacaccgtgatcttcgaggagttcaagggc
accggtaacgccgagctcaagctcgaccgcaagatcgcggaacggcgggtgttcccggct
gtcgacgtcaatccttcgggaacgcgtaaggacgagctgctgctcagtccggatgaggcc
gcggtgctgcacaagctccgccgggtgctgtctggtctcgattcgcaccaggccatcgat
ctgctgatcgatcgcctcaagaagagcaagagcaatctcgagttcctcatgcaggtgtcg
aagaccgctccgggcgcgatcgacgactga
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