Rhodococcus oxybenzonivorans: CBI38_11280
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Entry
CBI38_11280 CDS
T08279
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBI38_11280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roz03019
]
CBI38_11280
03009 Ribosome biogenesis [BR:
roz03009
]
CBI38_11280
Enzymes [BR:
roz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CBI38_11280
Messenger RNA biogenesis [BR:
roz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBI38_11280
Ribosome biogenesis [BR:
roz03009
]
Prokaryotic type
rRNA processing factors
CBI38_11280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWK72074
UniProt:
A0A2S2BU36
LinkDB
All DBs
Position
2370359..2373847
Genome browser
AA seq
1162 aa
AA seq
DB search
MADQAPPTNSEPNADSAGRTVPVLPEKMRVHALAKILGVTSKQVLAEAAALGTELRSAQS
SLQREVAERVYAAFAPTDVPEPAVEAEPAVPEPEQAAEPEPAVAAEQAVSEPEQAVEAES
VAAAEPTAEAEPAAAVEDAAPEASAPDQVRAEKELGRDLFTTSAYEVEAPAAEPGPETTP
AVAQVPLFLQPDPAAVETPRRRRSRRDAGTPDAASEQAQPAPEKRDVPAEPARSADTGTT
EAESDDADADGDQPRRRRRGRRGRGRGRGEQQNEQGTETDSDTESSDTVDTVEQTGEEKA
GDEKTADKPARESADAAEKEPAEAAESDETDSDQTGDEESGDADSDGSSRRRRRRRRRKS
GTDASGESVSEDDPPNTVVHEREPRNKSRAKDEVQGITGSTRLEAKRQRRRDGRDAGRRR
PPILTESEFLARREAVDRVMVVRDRIATGQPHATTQVAVLEDGVLVEHFVTTSASASMVG
NVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLV
QVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKDILRDIVPADA
GVIIRTASEGVSEEELARDVTRLQEQWAGIEEQAAKADAGKSGNPQALYEEPDLLVKVIR
DLFNEDFSRLVIEGEKAWSTVESYIKSVAPDLLPRLEQHTGHNGVDVFEAHRIDEQLAKA
LDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLR
DIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTGLV
EAFSTTCEHCHGRGIIVHAEPIDAKVSEDNGARGSSRGDAGGSRKKRGRDKSSGADVSPT
PPQEAVVPAVDATVKRAHPVALAMAHHHHEDAAAPERPRETAAHDAPRDEAVHDASRDEA
VHDASRNEAVHDAPSAEAAQVDAPAAEVAEATEQPFVASTAAEQTTDGTPTADLAGIEEA
VAEAPAAVAGEAVTAPEPVVEPVTPETAVTPEPAVAQEPAVTSGPVTPQRRRSRRVSRAA
AAPVSETPAAGTVFVIPASSESESESRSERAPESTPEPAMSTSAPSGSAGSSPSGTGVQP
APRRQRRRAAARPAGPPVDADN
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagcgccgcccacaaattcagaaccgaacgccgacagcgcaggacgtacg
gttcctgttcttccggaaaagatgcgcgtccacgctctggccaagatcctgggcgtcacc
agcaagcaggttctcgccgaggctgcggccctcggaaccgaactgcgcagcgcgcagtcc
agtcttcaacgtgaggtagccgagcgcgtgtacgcagcgttcgcgcccaccgacgtccct
gagccggcggtcgaggccgaaccggccgttcctgagcccgagcaggcggctgaaccagaa
ccggcagtcgccgctgagcaggccgtttccgaaccggagcaggccgtcgaagccgagtcg
gtagctgcagccgagccgacagctgaagccgagccggcggcggcggtcgaggacgccgca
cccgaggcgagcgcgcccgaccaggtacgggctgagaaggaactcggccgcgacctgttc
acgacctccgcgtacgaggtcgaagcccccgcagcggagcccggccccgagaccactccc
gccgtcgcgcaggttccgttgttcctgcagcccgaccccgctgcggtcgagacgccgcgt
cgtcgtcgcagccgtcgggacgcaggaacgccggacgccgcttccgagcaggcgcaaccc
gcccccgagaagcgggacgtccccgctgagcccgcacggtccgccgacaccggaaccaca
gaagccgaatccgacgatgccgatgccgatggcgaccagccgcgccgccgccgccgggga
cgccggggccgtggccgcggccgcggcgagcagcagaacgagcagggcaccgagaccgac
tccgacaccgagtcctcggacactgtcgacacggtcgagcagacaggggaagagaaggcg
ggggacgagaagaccgccgacaagcctgcccgcgaatccgccgacgcagccgagaaggag
ccggccgaggccgcggagtcggacgagacggattcggatcagaccggtgacgaagagtcc
ggcgacgccgactcggacggttcgagccgtcgccgtcgccgccgtcgtcggcgcaagtcg
ggtaccgatgcttccggcgagagcgtttccgaggacgatccgcccaataccgtcgtccac
gagcgtgaaccccgcaacaagagccgggcgaaggacgaagtccaaggcatcaccgggtcg
acacgactcgaggcgaagcgtcagcgtcgccgcgacggtcgcgatgccggccgccgtcgc
ccgccgattctcaccgaatccgaattcctggctcgccgcgaggcggtggaccgcgtcatg
gtggtccgtgaccggatcgccaccgggcagccccacgccaccacgcaggttgcggttctc
gaggacggggttctcgtcgagcacttcgtgaccacgtccgcgtcggcctcgatggtcggg
aatgtgtacctcggacgcgtccagaacgttctgcccagcatggaggcggcgttcatcgac
atcggccgcggccgtaacggcgtgttgtacgcgggtgaggtcaactgggaggccgccggg
ctcggcgggaactcccgcaagatcgagcaggcgctcaagccgggcgaccaggtcctcgtg
caggtgagcaaggatccggtcgggcacaagggtgcgcggctgaccacgcagatcagcctg
gccggccgattcctcgtgtatgtgccgggcggcacctccaccggaatcagccgcaagctg
cccgacaccgaacgcaagcgtctcaaggacatcctccgcgacatcgttccggcggacgcc
ggtgtgatcatccgcaccgcttccgaaggtgtgagcgaggaagagctggcgcgtgacgtc
acccgtctgcaggagcagtgggccggaatcgaagagcaggccgccaaggcggacgccggc
aagtccgggaatccgcaggccctctacgaggagccggacctgctggtcaaggtgattcgc
gacctgttcaacgaggacttctccagactcgtcatcgagggtgagaaggcgtggtcgacg
gtcgagtcctacatcaagtccgtggctcccgacctcttgccgcggctcgagcagcacacc
ggacacaacggtgtcgacgtcttcgaagcgcaccgcatcgacgagcaacttgccaaggca
cttgaccgcaaggtgtggttgccgtcgggtggcacgctcgtgatcgatcgcaccgaggcc
atgaccgtggtcgacgtcaacaccggcaagttcacgggtgccggcggcaacctcgaggag
accgtcacccgtaacaacctcgaagccgccgaggagatcgtgcggcagatgcgcctgcgc
gacatcggcggcatgatcgtcgtcgacttcatcgacatggtgctcgaatcgaaccgggac
ctggtgctgcggcgtctcaccgaggccctgggccgcgaccgcacccgccaccaggtgtcg
gaggtcacgtccctcggcctggtgcagatgacccgcaagaagttgggtaccggcctcgtc
gaggcgttctccaccacctgtgagcactgccacggacgaggaatcatcgtccacgccgag
ccgatcgacgcgaaggtctccgaggacaacggggcacgggggtcctcccgcggcgacgcc
ggcggctcccgcaagaagcgcggtcgcgacaagtcctccggtgccgatgtgtcgccgacg
cccccgcaggaggctgtcgtcccggccgtggatgccaccgtgaagcgggcgcatccggtg
gctctggccatggcccaccaccatcacgaggacgcggcagcgcccgagcggccccgcgaa
acggcagcgcacgacgcacctcgtgacgaggctgtgcacgacgcatctcgtgacgaggct
gtgcacgacgcatctcgtaacgaggctgtgcacgacgcgccttctgccgaggcggcgcag
gtggatgctccggccgcggaggtcgccgaggctacggagcaaccgttcgtcgcttctacc
gcggcggagcagacgacggacgggacgcccacggcggacctggccggaatcgaagaggcc
gttgccgaggcaccggcggcagtcgccggcgaagcggtgacggcaccggaacccgtggtc
gagcccgtgacgcccgaaactgcggtgacaccggaacctgctgtcgcgcaggaacctgct
gtgacatccggacccgtgactccgcagcggcgtcgtagtcgccgagtatcgagggcagcg
gccgcaccggtgtccgaaaccccggcagcgggcaccgtcttcgtgattcctgcctcgtcg
gagtcggaatcggagtctcggtcggagagggctccggaatcaactccggaaccggcgatg
tccacatcggcgccgagcgggtcggccggttcctcgccctccggcacgggtgtgcagcct
gcgcctcgtcggcagcgtcgtcgcgcagcggcgcgtcccgccggtccgccggtggacgcc
gacaactga
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