Rhodococcus oxybenzonivorans: CBI38_11330
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Entry
CBI38_11330 CDS
T08279
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBI38_11330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roz03019
]
CBI38_11330
03400 DNA repair and recombination proteins [BR:
roz03400
]
CBI38_11330
Enzymes [BR:
roz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBI38_11330
Messenger RNA biogenesis [BR:
roz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBI38_11330
DNA repair and recombination proteins [BR:
roz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBI38_11330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
HEM4
Motif
Other DBs
NCBI-ProteinID:
AWK72084
UniProt:
A0A2S2BU46
LinkDB
All DBs
Position
complement(2381599..2383698)
Genome browser
AA seq
699 aa
AA seq
DB search
MTTATTPALRDEAERLLRELAGPEAQLRDDQWTAIEALVVGRRRALVVQRTGWGKSAVYF
IAAKLLRADGHGPTVIVSPLLALMRNQVASAERAGVRAATINSGNVTEWDEIHARVAAQE
LDVLLVSPERLNNPDFRDQVLPSLAADAGLVVVDEAHCVSDWGHDFRPDYRRIRTLIGEL
GQGIPVLATTATANDRVVTDVSTQLGVGGGETLVLRGGLERESLHLSVVQIPEATARAAW
LAQKLDSLPGSGIIYALTVSAARDLASLLTEQGHTVAAYTGQTDAGEREGLEQDLLDNRV
KALVATSALGMGFDKPDLGFVVHLGAPSSPISYYQQVGRAGRSTDRAEVILLPGSEDRQI
WSYFASVAFPREHMVRRVIEVLDPDRPQSTQALEPLVELGRTRLEMVLKVLDVDGAVRRV
RGGWVGTGQPWTYDAERYERLERARESEQQAMLDYQRITTCRMAFLREQLDDPGLVAGAS
DCGRCDNCTGEHYDTAVDADAVAQTRSRLERPGIDLAPRKQWPSGLRKLGVALSGKITDG
PEPGRVLGRLSDLGWGQRLRTLMDGPDGPAPENVLQACIAVLASWDWTQRPTAVMAVEST
THPLLAASLAERLAQIGRLEHLGVLRQRPGHPPVSAANSAYRVAGLADAWETPQLPGSTG
PVLLVDTLTDTGWTLTMAARTLRAAGATSVLPFALAAVK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgccaccacgcccgcactccgcgacgaggccgaacgcctgctccgagagctg
gcaggacccgaagcgcagctgcgggacgaccagtggactgccatcgaggcgctcgtcgtg
gggcggcgacgcgcgctcgtcgtccaacggaccgggtggggtaaatcagctgtctacttc
atcgcggccaagctgttgcgggccgacgggcacgggccgaccgtcatcgtgtcgccgctt
ctggccctcatgcggaatcaggtggcgtcggcagaacgggcgggagtccgggccgccacg
atcaactcgggcaacgtcacggagtgggacgaaattcacgcccgtgtcgcggcacaagag
ctggatgtcttgttggtcagcccggaacgcctgaacaaccccgacttccgcgaccaggtt
cttccttccctcgccgccgacgccggcctggtcgtcgtcgacgaagcccattgcgtctcg
gactggggccacgacttccgcccggactatcggcgcatccgcacgctgatcggcgagctc
gggcagggtattcccgtgcttgcgaccacggccaccgcaaacgaccgcgtggtcaccgat
gtctcgacccagctcggggtgggcggcggcgaaacgctggtgttgcgcggcgggctcgaa
cgcgaatcgctgcatctgtcggtggtgcagattcctgaggccacggcccgcgccgcgtgg
ctcgcccagaagctcgacagcctgcccgggtcggggatcatctatgcgttgacggtgtcg
gcggcacgagatctggcgagcttgctcaccgagcaggggcacaccgtcgccgcctatacg
ggacaaacggatgccggcgaacgggaaggcctcgagcaggatctactcgacaaccgcgtg
aaagccctggtggctacgtcggcgctcggcatgggcttcgacaagcctgacctcggattc
gtggtgcacctcggtgcgccgtcgtccccgatctcgtactatcagcaggtgggccgtgcg
gggcgttccacggatcgcgctgaagtgatcttgctccccggctcggaagaccggcagatc
tggagctatttcgcatcggtggcgtttccccgtgagcacatggtgcggcgggtcatcgag
gttctcgaccccgaccggccgcagtccacacaggccctggagccgctggtggaactgggg
cggacgcggctcgagatggtgttgaaggttctcgatgtcgacggtgcggttcgccgggtc
cgtgggggctgggtgggaaccgggcagccatggacctacgacgccgaacgctacgaacgt
ctcgaacgggcccgtgagtccgagcagcaggccatgctcgactatcaacgcatcaccacg
tgccggatggcgtttctgagggagcagctcgacgacccgggactggtagcgggggcgtcc
gactgcggtcggtgcgacaactgcacaggcgagcactacgacaccgctgtggatgcagac
gccgtggctcagacccgatcgcggctggagaggccgggcatcgacctcgcgcctcggaaa
cagtggccttcggggctcagaaagctcggtgtcgcgctgtcggggaaaattacggacggt
ccggaaccgggtcgtgtcctcggccgattgtccgacctcggctggggacaacgactgcgc
actctgatggacggaccggacggtccggcaccggagaacgtcttgcaggcctgcatcgcc
gtgctggcatcgtgggactggacgcagcggcccaccgccgtcatggccgtcgaatcgacc
acccatccccttctcgcggcctccttggcggagcggctcgcccagatcggacggctcgag
cacctgggagtcctgaggcaacgacccggccatccgccggtctctgcggccaactccgcc
taccgggtggccggtctggcagacgcgtgggaaacccctcaacttccgggttccacgggg
cctgttctgctcgtcgacaccctcaccgataccggctggaccctgacgatggctgcccgc
acgctgcgggcggcgggcgccacctcggtgctgcctttcgccctggcagccgtgaagtga
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