Rhodococcus oxybenzonivorans: CBI38_15145
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Entry
CBI38_15145 CDS
T08279
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBI38_15145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roz03019
]
CBI38_15145
03400 DNA repair and recombination proteins [BR:
roz03400
]
CBI38_15145
Enzymes [BR:
roz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBI38_15145
Messenger RNA biogenesis [BR:
roz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBI38_15145
DNA repair and recombination proteins [BR:
roz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CBI38_15145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
DUF977
DUF7343
Motif
Other DBs
NCBI-ProteinID:
AWK75567
UniProt:
A0A2S2C3S6
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All DBs
Position
3233680..3235332
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AA seq
550 aa
AA seq
DB search
MTERASDLCERLQATARDTFGWDTLRPAQLEAMQALMTGRDALVVMATGAGKSAIYQVPA
VLLTGTTLVISPLIALQEDQIAGIDSAGAPRAVAINSTRSARDLEATWRAVEKHEAEYVF
VAPEQLANSDVISRFEAAKVFLIVVDEAHCVAAWGHDFRPDYLRIADTVRRLGHPPVLAL
TATAPPPVRQEIIDRLALDDPAVVATGFDRPNITLEVDRYVSRADKERAVLDRVPDLPQP
GLLYTATRKDAEFYAEELSTRGLRTAAYHAGMKRSEREAVHEQFLDGRFDVVAATSAFGM
GIDKPDVRFVVHASVPDSLDNYYQQLGRAGRDGESALALLFYRPEELSLGRFFATHRSDE
DFLARVFELLRSGGRMKIKDLRAPLDAGSRKVTAAINLLEQVDAVAAEGRGFTARDLSTD
EALRRATDRAAADERLARSRVEMLREYADTRNCRRSFLLGYFGEAFDPPCGNCDRCCTTE
STEHPEPTGEAAATDQDAPWPVDTADEHTEWGPGTVMSTAPDRITVLFDDHGYRTLSVAA
VEESGVLRSR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcgcgcatccgacctatgcgagagattgcaggcgacggcgcgggacacattc
ggctgggacaccctgcgccccgcacagctcgaggcaatgcaggcgttgatgaccggccgc
gacgcgctcgtcgtcatggccaccggggcgggtaaatcggcgatctaccaggtccccgcc
gtcctgctgacgggaacgaccctggtcatctccccactgatcgcgttgcaggaggatcag
attgccggcatcgactcggcgggcgcaccccgggcggtggcgatcaactccacacggtcc
gcacgcgacctcgaggccacctggcgtgctgtcgagaagcacgaggccgagtacgtgttc
gtcgcccctgaacaactggcgaacagcgacgtgatctcgcgattcgaggcagcgaaagtc
ttcctcatcgtggtggacgaggcgcattgcgtcgccgcctggggccacgatttccgtccc
gactacctacgcatcgccgataccgtgcgaaggctcggtcacccacccgtcctcgcgctg
accgccacggcgccgcccccggtccggcaggaaatcatcgaccggttggcgctcgatgat
cccgcggtggtcgcgacgggcttcgaccgccccaacatcaccctcgaggtggaccgctac
gtcagcagagcggacaaggaacgcgccgtactcgaccgagtaccggaccttccgcaaccg
ggattgctgtacacggcgacccgcaaggacgccgaattctacgccgaagagctgtccacc
cgcgggctgcggaccgccgcataccacgccggaatgaagagatccgagcgggaggccgta
cacgaacaattcctcgacggccgcttcgacgtcgtggccgcgacctccgccttcggaatg
ggtatcgacaaacccgacgtacgcttcgtcgtccacgcctccgttcccgactccctcgac
aactactatcagcagctcggacgggcgggccgcgacggggagagcgcgttggcgctgctg
ttctaccggcccgaggagctgtcactcggcaggttctttgcgactcaccgatcggacgag
gattttctcgcccgggtgttcgaactgctccgcagcggtggccgcatgaagatcaaggac
ctccgcgcgccactcgacgccgggagccgcaaggtgacggcagcgatcaacctgctcgaa
caagtcgacgccgtcgccgcagaaggaagaggcttcacggcccgcgacctcagcaccgac
gaggccctgaggcgggcaaccgaccgtgccgccgcggacgaacgcctggcacggtcgcgt
gtcgagatgctgcgcgagtacgccgacacccgcaactgccgccgcagcttcctgctcgga
tacttcggcgaggccttcgacccgccctgtggcaactgcgaccgatgctgcacaaccgag
tccaccgaacacccggagcccaccggcgaggccgccgccaccgaccaggacgcaccctgg
ccagtcgacaccgcggacgaacataccgaatggggcccgggaaccgtaatgagcaccgca
cccgaccggatcaccgtcctgttcgacgaccacggctaccggaccctctccgtcgccgcc
gtcgaagagtccggtgtgctgcggtcacggtga
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