Rhodococcus oxybenzonivorans: CBI38_16940
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Entry
CBI38_16940 CDS
T08279
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
roz
Rhodococcus oxybenzonivorans
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
roz03016
]
CBI38_16940
Enzymes [BR:
roz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CBI38_16940
Transfer RNA biogenesis [BR:
roz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CBI38_16940
Prokaryotic type
tRNA splicing ligases
CBI38_16940
BRITE hierarchy
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GFIT
Motif
Pfam:
RtcB
SBSN_GxHH_rpt
Hexapep
Motif
Other DBs
NCBI-ProteinID:
AWK75620
UniProt:
A0A2S2C415
LinkDB
All DBs
Position
complement(3627019..3628221)
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AA seq
400 aa
AA seq
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MFPVTLEGTAAPTLMWAEERSIEPAALAQLRTMADLPWVHGVRVMPDVHVGKGATVGSVI
AMRQAVAPAAVGVDIGCGMTAVRTDVTADDLPDSLRSLRARIERAVPVGFAMHENSLDTG
ALSVSGAGVHKGWTRFWQEFRDLHPGVQSRESKAMKQIGTLGGGNHFIEVCLSDAEEVWL
MLHSGSRNIGKELAERHIAVARTLQHNQRLVDRDLAVFLAGTPEMDAYRHDLSWAQEYAA
RNRAVMLALIMQAFRDALPTRPVRFDDPISCHHNYVSEEVVDGETMLVTRKGAIRAGKGD
LGLIPGSMGTGSYVVRGLGSELSFNSASHGAGRTMSRTKAKKRFTVDDLRRQTSGVESRK
DAGVIDEIPAAYKDIEQVIDAQADLVEVVAHLRQVVCVKG
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccgtcaccctcgaaggcactgccgcgccgaccttgatgtgggcggaggaacgg
tccatagagccggccgcacttgcccagctccgcaccatggcagacctgccgtgggtccac
ggtgtccgcgtcatgcccgacgtccatgtcggtaagggcgcgacggtcggctccgtcatc
gcgatgcgtcaggctgtcgcacctgccgccgtgggggtcgacatcggctgcggcatgaca
gcggtcaggaccgatgtcaccgccgacgacctgccggacagtctgcggtcgctgcgcgcg
cgcatcgagcgtgcggttccggtgggattcgccatgcacgagaactctctcgacaccggt
gccctctcggtgtccggcgccggcgtccacaagggatggacgcgattctggcaggagttc
cgcgatctgcacccgggcgtccagtctcgtgaatcgaaggcgatgaagcagatcggaacg
ctcggcggcgggaatcacttcatcgaggtgtgtctgtccgacgcagaggaggtgtggctc
atgctccactccggatcccgcaacatcgggaaggaactggccgagcgacacatcgccgtg
gcgcggacgttgcagcacaaccagaggctggtcgatcgtgatctggcggtctttttggca
ggtacacccgagatggacgcctaccgccacgacctgtcgtgggcccaggaatacgcggcc
cgcaaccgcgccgtcatgctcgccctgatcatgcaggcattccgggacgctctgccgact
cggcccgtccgtttcgacgatccgatctcgtgtcaccacaactatgtgtccgaggaggtc
gtcgacggggagacgatgctcgtgacccgcaagggtgctattcgcgcaggaaagggagat
ctcggtctcattcccggttccatgggcaccggttcgtacgtggtgcgcggactggggtcg
gaactgtccttcaactccgcctcgcacggcgccggtcggaccatgagccgtacgaaggcg
aagaagcgtttcacggtcgacgacttgaggcgtcaaacgtccggcgtcgagtcgcgtaag
gacgccggggtgatcgacgagatcccggccgcgtacaaggacatcgagcaggtgatcgat
gctcaggccgatctggtcgaggtcgtcgcacacctgcggcaggtcgtgtgtgtgaagggc
tag
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