Rhodococcus oxybenzonivorans: CBI38_18875
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Entry
CBI38_18875 CDS
T08279
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03420
Nucleotide excision repair
roz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CBI38_18875
03430 Mismatch repair
CBI38_18875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roz03400
]
CBI38_18875
Enzymes [BR:
roz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CBI38_18875
DNA repair and recombination proteins [BR:
roz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CBI38_18875
MMR (mismatch excision repair)
Other MMR factors
CBI38_18875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AWK73318
UniProt:
A0A2S2BXT4
LinkDB
All DBs
Position
complement(4020506..4023826)
Genome browser
AA seq
1106 aa
AA seq
DB search
MTAHIDPVELAIGLGQHPPTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGF
VDPEAVLGLTFTRKAAQQLTSRIRKRLARLAGSDLLRRVDPSGELRSKLLAGEPEVSTYH
AYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDLDTDRNPVSVTEAVLALS
GQLAEHLVEAEDLREAHTELDKLVHTLPAGPRQRGGPGKELLDILDTQHRRVELLPLVHR
LAETLRREGALDFGSQMSLAARVASDHPEVGHAERARFRVVLLDEYQDTGHSQRVLLSSL
FGGGLDGRLALTAVGDPMQSIYGWRGASAANLPRFATDFPLPDGTPAPPLELLTSWRNPP
EALALANLVSAPLRERGVQVSTLRARPQAVPGDVRLALTGDVAEERAWVADRIAEQYAQA
SSRGEDPPTAAVLIRRNADAAPIAEVLRSRGLPVEVVGLGGLLHTPEVADVIAMLRVVAD
PMAGSAAVRLLTGARWQIGAADLTALSRRARELAIGTGYGTAGAVTDSSALAEAVEGALP
GEQAEQAGLADALADPGPAERYSPVGYARITAVAAELASLRERIGQPLTELVAEVERVLG
IGIEAQARTRTGAGTGAGREHLDAFADVVAGYASRSSATITGLLAFLSAAESVEKGLAPG
EVEVDPHRVQVLTVHSAKGLEWEVVAVPHLTAGVFPSRTATGTWLGALGELPPSLRGDRA
RTGESADGVPVLDLENLYSRKDLEDAVKSHKAALAARKLDEDRRLFYVALTRTERVLFAS
GHHWAESGSEPKGPSEFLTELRDLIADESHEGLGVVDVWAPAPDPETQNPLTRTPKAAAW
PPDPLGLRRESVEHGASLVLAALTEIGDASLEDEEDPENWAADVDALLAEREARAQARLE
VVLPAQLSVSQLVELEADPDALAARLRRPLPYPPNPLARRGTAFHAWVERRFGATRLLDL
DELPGAADTDAGPDTDLVTLQDAFLRSSWAHRSPIEVEVPFETAVAGTVLRGRIDAVFAD
PDGGWTVIDWKTGAEPSADKEKAVVMQLAAYRLAWAELMDVPLERVRAAFHYVRTGRTIA
PDTLPDADALAGLIRTAGADEEARQA
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgcacatcgacccggtggaactcgccatcggactcggtcagcacccacccaca
ccggaacaggcggcggtcatcgccgccccgctggggccgacgctggtcgtcgccggcgcc
ggagccggaaagaccgagacgatggcggcgcgggtggtgtggctcgtcgccaacggattc
gtcgacccggaagcggtgctgggcctgaccttcacccgcaaggctgctcagcagctcacc
agtcgcatccggaaaaggcttgcccggctggcgggttcggatcttcttcggcgggtcgat
cccagtggtgagctgaggtccaagcttctcgctggtgagccggaggtgagcacctatcac
gcgtacgccgggcggctgctgtccgagcacgggctgttactgcccatcgaaccgtcggcc
accttgttgtcggaaacggaactgtggcagctcgctcatcgcgtggtcagttcgtgggac
ggcgacctcgacaccgaccggaatccggtgtcggtcaccgaggccgtgctggcgctttcc
ggacaattggcagagcacctcgtcgaagccgaggatcttcgggaggcgcacaccgaactc
gacaagcttgttcacacactgccggcaggaccacgccagcgaggcgggccgggtaaggaa
ttgctcgacattctcgacacacagcatcggcgggtggaacttcttccgctggtgcaccgc
ctggcggagacgctccggcgggagggcgccctcgacttcggcagtcagatgtcgcttgcg
gcacgtgtcgcatcggaccaccccgaggtggggcacgccgagcgtgcgcgctttcgggtg
gtgctgctcgacgagtaccaggacaccgggcactcccagcgtgtgttgctgtcgtcattg
ttcggcggcggcctcgacgggcggctcgccctcaccgcggtcggtgacccgatgcagtcg
atttacggatggcgtggcgcgtcggcggccaaccttccgcggttcgccaccgacttcccg
ctgcccgacggcacaccggcgccgccactggaattgctgaccagttggcggaatccgccc
gaggcgctggcgctcgccaacctggtctcggcgccgctgcgggagcggggagtgcaggtc
agtacgctgcgggcgcggccgcaggctgttccgggcgatgtgcggctcgcgttgaccggc
gacgtggccgaggaacgcgcgtgggttgccgaccgtatcgcggagcagtacgcgcaggcc
tcgagcaggggagaggatccaccgactgcggcggtgctgatccggcgcaacgccgacgcc
gcgccgatcgcggaggtgctgcgctcgcgcggacttcccgtcgaggtggtggggctgggc
ggtctgttgcacactcccgaggtggccgacgtgatcgcgatgctgcgcgtggtcgccgat
cccatggcaggcagcgctgcggtccggttgttgacgggggcgcggtggcagatcggggct
gcagacctgacggcgttgtcccggcgagcgagggagcttgccatcggaaccggatacggc
accgccggcgccgtcaccgactcctcggcactggcggaggcggtcgagggcgcattgccc
ggcgaacaggccgagcaggccgggctcgcggacgcgttggcggatcccggaccagccgaa
cgatattcaccggtggggtacgcgcgcatcaccgcagtcgcagccgagctggcatccctg
cgtgagcggatcgggcagcccctcaccgaactcgtggccgaggtggaacgggtactcggc
atcggcatcgaggctcaggcccggacccgcactggtgcgggaacaggcgcagggcgcgaa
cacctggacgccttcgcggatgtcgttgccggatacgccagccggtcctcggccaccatc
accggattgctcgcgttcctttccgcggccgaatccgtcgaaaagggattggcgcccggc
gaagtggaggtcgatccgcaccgcgtccaggtgctcacggtgcactcggcgaaggggctc
gaatgggaagtggtggcggtgccccatctcaccgcaggcgtgttcccgtcacggaccgcg
accggaacctggctcggcgccctcggtgaattgccgccgtcgttgcgtggcgaccgcgcg
cggacgggagaatccgcagacggcgtaccggttctcgatctcgaaaacttgtacagccgt
aaggatctcgaggatgccgtcaagtcgcacaaggcggccctcgcggcgcgcaagctcgac
gaggatcgccggctcttctacgttgcgctcacgcggacggagcgggtgctgttcgcttcc
ggtcatcactgggcggagtcgggcagcgaaccgaagggcccgtccgagttcctcaccgaa
ctccgcgacttgatcgcagacgagtcacacgagggtctcggcgtcgtggacgtatgggcg
cccgcacccgaccccgagacgcagaatcctctcacccgaacccccaaagcggcagcgtgg
ccgccggacccgctgggactgcgacgggagtcggtcgaacacggtgcttccctggtgctc
gcggcgctgaccgaaatcggtgatgcatccctggaagacgaagaagaccccgagaactgg
gcggccgacgtcgacgcgctcctcgctgaacgcgaagcccgcgcgcaggctcgcctcgaa
gtggtcttgcctgcgcagctgtcggtgagtcagctggtcgaactcgaggcggacccggat
gcgctggctgcgcggttacgcaggccacttccgtacccgccgaacccgctggcacggcga
ggaaccgcgttccacgcctgggtagagcgccggttcggggcgacccggctgctcgacctc
gacgagctcccgggcgcggccgacaccgatgcaggaccggacacggacctggtgacgttg
caggacgcattcctacgttcgtcgtgggctcatcgcagtcccatcgaggtggaggttccg
ttcgagacggcggtggcagggacagttctgcgtgggcggatcgatgcggtgttcgcggac
ccggacggcgggtggacggtgatcgactggaagaccggagcggagccgagtgccgacaag
gagaaggcggtggtgatgcagctcgccgcgtatcggcttgcctgggccgagctgatggac
gtacccctggagcgtgtgcgggccgcgttccactacgtccgcacaggccgcacgatcgcg
ccggacaccctgccggacgccgacgctcttgccggcctcatccgcaccgccggcgcggac
gaggaagcgcgtcaggcctga
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