Rhodococcus oxybenzonivorans: CBI38_20570
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Entry
CBI38_20570 CDS
T08279
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBI38_20570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roz03019
]
CBI38_20570
03009 Ribosome biogenesis [BR:
roz03009
]
CBI38_20570
Enzymes [BR:
roz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CBI38_20570
Messenger RNA biogenesis [BR:
roz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CBI38_20570
Ribosome biogenesis [BR:
roz03009
]
Prokaryotic type
rRNA helicases
CBI38_20570
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
AWK73607
UniProt:
A0A2S2BYA5
LinkDB
All DBs
Position
complement(4402711..4404474)
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AA seq
587 aa
AA seq
DB search
MSDIEREPEPPTFADLDIDDRVLKALSDVGYESPSPIQAATIPPLLAGNDVVGLAQTGTG
KTAAFAVPILSRIDLTQKSPQALVLAPTRELALQVAEAFGKYATHIPGLHVLPIYGGQSY
GVQLSGLRRGAHVVVGTPGRVIDHLEKGTLDLSKLSYLVLDEADEMLKMGFQEDVERILS
DTPEQKQVALFSATMPGAIRKISKQYLHDPIEITVKSKTSTASNISQRYVQVAHQRKLDA
LTRVLEVESFEAMIIFVRTKQATEDLAERLRARGFSAAAINGDIVQAQRERTIGQLKSGA
LDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRAGEALLFVAPRERH
LLKAIEKATRQPLAEMQLPSVDDVNAQRVAKFGDSITESLTSDNLALFRKMIEDYEQEHD
VPLADIAAALAVQSRDGDAFLMSPEPPPPPRREREPREPRERPARRFDDGPPTRSRGPEG
QELATYRIAVGKRHRVVPGAIVGAIANEGGLRRSDFGHISIRPDHSLVELPADLSRETLE
ALRRTRISGVLIQLQPDSGPPSGRPGRGDRDAGKFQRDRDSRRKPRE
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatatcgaacgtgaacccgaaccgcccacttttgccgacctcgacatcgatgat
cgggtcttgaaggcactgtccgatgtgggctacgagtcgccctcgccgatccaggcagcc
accatcccgcctctgctcgcaggtaacgacgtcgtcggactggcccagaccggtaccggc
aaaactgccgcgttcgcggttccgatcctctcccggatcgacctcacccagaagtcgccg
caggccctggtgctcgcgccgacgcgtgagctggctctgcaggtcgcggaggcgttcggt
aagtacgccacccatattccgggtctccatgtgctgccgatctacggcggccagagctac
ggcgtccagttgtccgggctgcgccgcggcgcccacgtcgtcgtcggcacgcccggccgg
gtcatcgaccacttggaaaagggcacgctcgacctgtccaagctgtcgtacctcgtcctc
gacgaggccgacgagatgctgaagatgggcttccaggaagacgtcgaacgcatcctgtcc
gatacgccggaacagaaacaggtggcgttgttctcggccaccatgccgggcgcgatccgc
aagatttccaagcagtacctgcatgatcccatcgagatcacggtgaagtcgaagacgtcc
accgcgtccaacatctcgcagcggtacgtgcaggtggcgcatcagcgcaagctcgacgct
ctcacccgtgtcctcgaggtggagtcgttcgaggccatgatcatcttcgtgcgcaccaag
caggccacggaggatcttgccgaacgcctgcgcgcccgcgggttctcggctgccgcgatc
aacggcgacatcgtgcaggcgcagcgtgaacgaaccatcggccagctcaagagtggtgct
ctcgacatcctcgtcgccaccgacgtcgctgcccgcggtctcgacgtcgaccgcatctcc
cacgtggtgaactacgacattccgcacgacacggagtcctacgtgcaccgcatcggccgt
accggtcgagcaggacgggcgggcgaggctctgctgttcgtcgcgccccgggaacggcac
ctcctcaaggcgatcgagaaggcaacacggcagccgctggccgagatgcagcttccgagc
gtcgacgacgtcaacgcgcagcgcgtcgcgaagttcggcgactccatcaccgagagcctc
acctccgacaacctggcgttgttccgcaagatgatcgaggactacgagcaggagcacgac
gtgccgctcgccgacatcgcagcagcgctcgcggtgcagtcgcgcgacggtgacgcattc
ctgatgtcacccgaaccgccgccgccgccgcgtcgcgagcgtgaaccgcgggaaccccgg
gaacgtccggcccgtcgattcgacgacggcccgcccacccggtcgcggggcccggagggt
caggaactcgccacctatcgcatcgcggtggggaagcggcatcgcgtggtgcccggcgcc
attgtgggtgccatcgccaacgagggcgggctgcggcgcagcgatttcgggcacatcagc
atccgtcccgatcacagcctggtggaactacccgcagacctgtcccgggagacgctcgag
gccctgcggcgcacccgcatctccggtgtgctgatccagcttcagcccgactccggccca
ccctcgggaaggcccggccggggcgaccgcgacgccggtaagttccagcgtgaccgcgac
agtagaagaaagccgcgcgagtag
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