Rhodococcus oxybenzonivorans: CBI38_32325
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Entry
CBI38_32325 CDS
T08279
Name
(GenBank) exoribonuclease II
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
roz
Rhodococcus oxybenzonivorans
Pathway
roz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
roz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBI38_32325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
roz03019
]
CBI38_32325
03016 Transfer RNA biogenesis [BR:
roz03016
]
CBI38_32325
Enzymes [BR:
roz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CBI38_32325
Messenger RNA biogenesis [BR:
roz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBI38_32325
Transfer RNA biogenesis [BR:
roz03016
]
Prokaryotic type
tRNA degradation factors
CBI38_32325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
dsrm
Motif
Other DBs
NCBI-ProteinID:
AWK76663
UniProt:
A0A2S2C763
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All DBs
Position
pRB98:330877..332754
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AA seq
625 aa
AA seq
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MRSSTVTDVSTLLMIDSASARDRDDAFSVTPLVGGGGWTVEVHIAGVADVVELGSVADEQ
AFLRAETRYLRSRTIPMLGETAEQAATLTADSRRTSLRVTGTLTTDGRLVDTAVGRAQIP
SGRCVAVDHAEVPGILTDPAHPLHPQLAAADAAAQVLLTARRDGGALAFYDLTRGWASNE
DGAIVAIAAELRTVTYVIVQELMISTNEAVALWCVEQGLPILFRNHRPNPVAGSTDELMN
EIAAAAGDPDLFAKLRGRLLSTLRAATYDPTVHGHYGLRLSAYSHVTSPLRRVADLINQR
IIFAHLDSSPAPYTADQLAALGADLNRRTRAAREAKKNHFKHADQRIVAEQATADLTALD
SRRFHKVLKAEAAGSLRAQLAAELARRVDADLMTAPDVAVLIDAADPTWLPIQLRVLDTL
ADTHPEMGPSVASVWRQTHPDQPPTDLEIRRNGAAHNPLFAARATHLGVRGPWATSTAKR
QAEQAALWAAVRAQLIGTDQPDTEPDWPTTEPSPQPTTPLLAPQVSGFAESAEPHCTATP
AALNLDGAKKSKALSNPIAWLMSLAQNNNQPPPEWNFCTEGPAHAPRFTATVRLAGHSAT
ADATTKTAAKTASATALIETLFRQR
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcttcgacagtcacggacgtgtcgacgctgctgatgatcgattcggcgtctgcg
cgggaccgggacgacgccttctctgtcaccccgctcgtcggtggcggtgggtggacggtg
gaggttcacatcgccggcgtggccgacgtcgtggaactggggtcggtcgccgacgagcag
gcgttcctgcgggctgaaacccgctacctgcgcagccgcaccattccgatgctcggcgag
acggcggagcaggctgccaccctgaccgctgattcccggcgcaccagtctgcgggtcacc
ggcactctcaccaccgacggccggctggtcgacaccgccgtaggccgcgcacagattccg
tcgggtcggtgtgtggcggttgatcacgccgaggtgcccggcatcctgaccgacccggca
catccgctgcacccgcagctggccgcggcggatgcggccgcgcaggtcctgctgaccgcc
cgccgcgacggcggtgccctcgcgttctacgacctcacccgcggctgggcgagcaatgag
gacggggccatcgtggcgatcgccgccgaactgcggaccgtcacctacgtcatcgtgcag
gaactgatgatctccaccaacgaggcggtcgccctctggtgcgtcgagcagggcttgccg
atcctgttccgcaaccaccggcccaacccggtcgccggcagcaccgacgagctgatgaat
gagatcgccgccgcggccggggatccggacctgttcgcgaaactgcgcggacgcctgctc
tcgacgctgcgggccgcgacctacgatccgacggtccacggacattacggcctgcgcctg
agcgcctatagccatgtcacgtccccgctgcggcgggtggccgacctgatcaaccagcgg
atcatcttcgcccacctcgactcctcccccgccccctacaccgcggatcagcttgccgcc
ctcggcgcggatctgaaccggcgcacccgcgccgcccgggaagcgaagaagaatcacttc
aaacacgccgaccaacgcatcgtcgccgagcaggccaccgccgatctcactgcactcgac
agtcgacgattccacaaggtcctcaaagccgaagccgccggatcccttcgggctcaactc
gccgccgagctcgcccgccgcgtcgacgccgacctgatgaccgccccggacgtcgcggtc
ctgatcgacgccgccgaccccacctggcttcccatccaactccgcgtcctggacaccctc
gccgacactcacccggagatggggcccagcgttgcgtcggtgtggcggcaaactcacccc
gatcaaccgcccaccgacctggagatccggcggaacggcgccgcccacaacccactgttc
gccgcccgcgccacccacctcggggtccgggggccatgggccacctcaactgcgaagagg
caggccgaacaagccgccctctgggcggcagtgcgcgcgcaactaatcggcaccgaccag
cccgacacggaaccggactggcccaccaccgagccatccccgcaaccgacgactccccta
ctggcgccgcaggtttccggtttcgccgaatccgcggaaccacactgtacggccacgccg
gccgccctgaacctggacggggcgaagaagtccaaggctctgtcgaaccccatcgcttgg
ctgatgagtctcgcccaaaacaacaaccagcccccacctgagtggaacttctgcacagag
gggcccgcacacgcacctcggttcaccgccaccgtgcgcctcgccggccacagcgccacc
gctgacgcgaccacaaaaacggcggcgaagaccgcatcggcgaccgcgctcatcgagaca
cttttcagacagcgctga
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