Rhodopseudomonas palustris CGA009: TX73_000260
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Entry
TX73_000260 CDS
T00153
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rpa
Rhodopseudomonas palustris CGA009
Pathway
rpa02020
Two-component system
rpa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TX73_000260 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TX73_000260 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpa03021
]
TX73_000260 (rpoN)
Transcription machinery [BR:
rpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TX73_000260 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Arg_repressor
ETF
Motif
Other DBs
NCBI-ProteinID:
WCL90175
UniProt:
Q6NDQ5
LinkDB
All DBs
Position
56042..57688
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AA seq
548 aa
AA seq
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MALSQRLEFRQTQSLVMTPQLMQAIKLLQLSNLDLAAFVEDEIEKNPLLDRAGDNAEPPV
AGEASAEGAEGGGEFGGSGGEDLGGEGTSDFVDPAGAGAFEPGTEEWMHRDLGSRSDIEQ
TLDTGMENVFPEEPAEAAARAAQDAAPASYTEWGGGASSDEGYNLEAFVAAESSLADHLA
EQLAVAVTTPSQRLIGQYLIDLVDDAGYLPADLGDAAERLGASQAEVEALVQVLQTFDPP
GICARNLSECLAIQLRERDRYDPAMQALVEHLDLLAKRDVASLRKICGVDDEDLVDMIGE
IRHLDPKPGLKFGSSRVQTVVPDVFVRPGPDGGWLVELNSDTLPKVLVNQSYYSELSKTI
RKDGDKSYFSDCLQNATWLVRALDQRARTILKVATEIVRQQDGFFTHGVKHLRPLNLKAV
ADAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHQIRQLID
SEDPSAILSDDTIVERLREAGIDIARRTVAKYREAMRIPSSVQRRRDKQNMLGTQAGAAS
RSRDTAPA
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcgcaacgtctcgaattccgccagacccagtctctggtgatgaccccgcaa
ctgatgcaggcgatcaagctgcttcagctgtcgaatctcgacctcgctgctttcgtcgag
gacgagatcgagaagaacccgttgctcgatcgcgccggcgacaatgcggaaccgccggtg
gccggtgaggcatcggcggaaggcgcagagggcggcggtgaattcggcgggagcggcggc
gaggatctcggcggcgagggcacgtcggatttcgtcgatcccgcaggcgccggcgcattc
gagcccggcaccgaagaatggatgcatcgcgacctcggcagccgcagcgatatcgagcag
accctcgataccggtatggaaaacgttttccctgaagagccagccgaagccgcggcccgc
gccgcgcaggacgccgcaccggcctcctataccgaatggggcggcggggcttcatcggat
gagggctacaatctcgaagccttcgtggccgctgaatcgtcgctggccgaccatctcgcc
gaacaactcgcggtcgcggtaacgacgccatcgcagcggctgatcggacaatacctgata
gatctggtcgatgatgccggctatctgccggccgatctcggcgatgccgccgaacggctg
ggcgcgagccaggccgaagtggaagcgctggtgcaggtgctgcagaccttcgatccgccc
ggtatctgcgcccgcaacctgagcgaatgcctcgccatccaactgcgcgaacgcgaccgc
tacgatccggcgatgcaggcattggtcgagcacctcgacttgctggccaagcgcgacgtc
gcgtcattacgcaagatctgcggcgtcgacgacgaagacctcgtcgacatgatcggcgag
attcgtcatctcgatccgaagcccggcctgaagttcggctcgtcgcgggtgcagaccgtt
gtgcccgacgtattcgtccgtcccggccccgacggcggctggctggtcgagctcaacagc
gacacgctgccgaaggtgctggtcaaccagtcgtattattccgagctgtcgaagacgatc
cgcaaggacggcgacaagtcgtatttctccgactgcctgcagaacgccacctggctggtg
cgcgcgctcgatcagcgcgcccgcaccatcctgaaggtggcgaccgagatcgtgcgtcag
caggacggattcttcacccacggcgtcaagcatctgcggccgctgaatctgaaggccgtg
gccgacgcgattcagatgcacgaatcgacggtgtcgcgcgtcaccgccaacaaatacatg
gcgaccaatcgcggcactttcgaacttaagtatttcttcaccgcgtcgatcgcgtccgcc
gacggcggcgaggcgcactcggccgaagcagtgcggcaccagatccgccaactgatcgac
agcgaagatccgtcagcgatcctgtcggatgatacgatcgtcgaacggcttcgcgaggcc
ggcatcgacatcgcgcgccgcaccgtcgcgaaatatcgcgaagcgatgcgcattccctct
tcagtgcaacgccgtcgcgacaagcagaacatgctgggcacacaggccggggccgcaagc
cgctcccgcgacacagccccagcttga
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