Rhodopseudomonas palustris CGA009: TX73_006610
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Entry
TX73_006610 CDS
T00153
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rpa
Rhodopseudomonas palustris CGA009
Pathway
rpa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TX73_006610 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpa03021
]
TX73_006610 (rpoD)
Transcription machinery [BR:
rpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TX73_006610 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WCL91423
UniProt:
Q6NA97
LinkDB
All DBs
Position
1406729..1408825
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AA seq
698 aa
AA seq
DB search
MASKAKTVQVQDKDKDDKVDAPEKDSVDAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQLN
EVLPSDTTSPEQIEDIMSMLSDMGINVSEAEDTEAEEEEAKEEADEELDNDLVEVTAKAV
TETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQ
AIIIWRDELNEGKIFLRDIIDLEATYAGPEGKNNIGEPGEEAAAEGEGGAPAHVAPPAAP
PSATPFRPAQQRGAAPAEAEGEGAPEGDGDDDEFENQMSLAAIEAELKPKVVETFDKIAD
NYKKLRKLQEQDIANQLQNEQLSPSQERKYKKLKDEIIVEVKSLRLNQARIDSLVEQLYD
INKKLVSFESRLMRLADSHGVARDDFLRNYQGSELDPRWLNRVSKLSAKGWKNFVHHEKD
RIKDLRQEVQSMAALTGLEIGEFRKIVHSVQKGEREARQAKKEMVEANLRLVISIAKKYT
NRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
MIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPVGDEE
DSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEE
VGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggccagcaaggcgaagacggttcaggtgcaggacaaggacaaggacgacaaggtagac
gcgccggagaaggactccgtcgacgctccctcgccgctcctcgacctgtcggatgcggcc
gtcaagaagatgatcaagcaggcgaagaagcgcggcttcgtcaccttcgatcagctcaat
gaagtgctgccctccgacaccacgtcgccggagcagatcgaagacatcatgtcgatgctg
tccgacatgggcatcaatgtgtccgaggcggaagacaccgaggccgaagaggaagaggcc
aaggaagaggccgacgaggagctcgacaacgatctggtcgaagtcaccgccaaggccgtc
accgagaccaagaagtccgagcccggcgagcgcaccgacgatcccgtccgcatgtacttg
cgcgagatgggcaccgtcgagctgttgtcgcgcgagggcgaaatcgccatcgccaagcga
atcgaagccggccgcgaggcgatgatcgccgggctgtgcgaaagcccgctgaccttccag
gcgatcatcatctggcgcgacgaactcaacgaaggaaagatcttccttcgcgacatcatc
gatctcgaagcgacctacgccggccccgagggcaaaaacaacatcggcgagcccggtgag
gaagccgcggccgaaggcgagggcggtgcgcccgcgcacgtcgcgccgccggcggctccg
ccgtccgccaccccgttccgtcccgcgcagcagcgcggcgccgcgccggccgaagccgag
ggcgaaggcgcgcccgagggcgatggcgacgacgacgagttcgagaaccagatgtcgctc
gccgcgatcgaggccgagctgaagccgaaggtggtcgagactttcgacaagatcgccgac
aactacaagaagctgcgtaagctgcaggagcaggacatcgccaaccagctgcagaacgag
cagctgtcgccgtcgcaggagcgcaagtacaagaagctgaaggacgagatcatcgtcgag
gtgaagtcgctgcgcctcaaccaggcccgtatcgacagcctggtcgagcagctctacgac
atcaacaagaagctggtgtcgttcgagagccgcttgatgcggctcgccgacagccacggc
gtcgcccgtgacgacttcctgcgcaactatcagggctcggagctcgatccgcgctggctc
aaccgggtgtcgaagctctcggccaagggctggaagaactttgtccaccacgagaaggac
cggatcaaggacctgcgccaggaagtgcagtcgatggcggcgctcaccggcctcgagatc
ggcgaattccgcaagatcgtccactcggtgcagaagggcgagcgcgaagcccgtcaggcc
aagaaggaaatggtcgaggccaacctccgcctcgtgatctcgatcgccaagaagtacacc
aaccgcggcctgcagttcctcgatctcattcaggaaggcaacatcggcctgatgaaggcg
gtcgacaagttcgagtatcgccgcggctacaagttctcgacctacgccacctggtggatc
cggcaggcgatcacccgctcgatcgccgaccaggcccgcaccatccgcatcccggtgcac
atgatcgagacgatcaacaagatcgtccgcacctctcggcagatgctcaacgagatcggc
cgcgagccgaccccggaagagctcgccgagaagctcggcatgccgctggagaaggtccgc
aaggtcctgaagatcgccaaggagccgctgtcgctcgaaaccccggtgggtgacgaggag
gacagccatctcggcgacttcatcgaggacaagaacgcggtgctgccgatcgacgccgcg
atccagtcgaacctgcgcgagaccaccacgcgcgtgctcgcctcgctcaccccgcgcgaa
gaacgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccacacgctggaagaa
gtcggccagcagttctcggtgacccgcgagcgcatccgccagatcgaagcgaaagcgctg
cgcaagctgaagcatccgtcccgcagccgcaagctgcggagcttcctggataactaa
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