Rhodopseudomonas palustris CGA009: TX73_012670
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Entry
TX73_012670 CDS
T00153
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rpa
Rhodopseudomonas palustris CGA009
Pathway
rpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TX73_012670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpa03019
]
TX73_012670
03009 Ribosome biogenesis [BR:
rpa03009
]
TX73_012670
Enzymes [BR:
rpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TX73_012670
Messenger RNA biogenesis [BR:
rpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TX73_012670
Ribosome biogenesis [BR:
rpa03009
]
Prokaryotic type
rRNA processing factors
TX73_012670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WCL92609
UniProt:
Q6N713
LinkDB
All DBs
Position
complement(2779170..2782325)
Genome browser
AA seq
1051 aa
AA seq
DB search
MANKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSSRRRSRHRSHRR
RNNGERVQSEIVEAATDVAAEQPHEAADHHEAHEAGAHAEAERLMHELPEGETAEQHDAE
YVADHEHTHVEAAPSEPQVSAAAEPVTIEQPAVAEAPAPVEAPQAAASHDETDAHDDDHG
EDSANYAEDAPFPIDEHHEAEDEHEAHDDHVEGEHEVETDSDTEAEAEDDEEEDDEEEAE
EDVVESVGGDDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLS
LAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGASRTKPEI
KRDFEYLIRMWETVRDVTLNSQAPKLVYEEGSLIKRSLRDLYNKEIDEVLVAGEAGYREA
RDFMHMLMPSQVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVS
IDVNSGRSTREHHIEDTALKTNMEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVER
KLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVAL
QLLRGLEEVLMKGATHNLIVRTRTDVALYVLNHKRGHLRDLETGFRVSLSVLADPTVSGQ
QSFVIDRGEQVHTLETAKALLAAQIAASPAPLDEPEDDDGYDFEAEIETDETVGLAEDQG
SEAGESESEGRKRRRRRRRRRSGEPREAAEAGAVGEDGEQPFVSEGVEQVGEADEGDEAG
EDDSDAEARADQGENGERRPRRRGRRGGRRRRGNAEAGENEAGVVGSISDELSPTDEAEA
ADAVADFDGGSPSVQPSFEPAAEAEQPHDAQPHDIAPSEPQHTTATAAPDTSDPSAEDDS
AAKKAARRRSTVREKVSFGASAAASETTAEAAAEVQPEPTAQAEQPATAAPAVEAPAAEA
APQAAAQPAEEPSSAAPRRVGWWSRRFGGGN
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaagatgctgatcgacgccacccacccggaagagacccgggtggtcgtggtc
cgtggcaaccgcgtcgaagagtttgatttcgaaaccgcccagcgcaaacaactccgcggc
aatatctatctcgcaaaagtcacccgggtcgaaccctcgctacaagccgccttcatcgaa
tatggcggcaatcgccacggcttcctcgccttcagcgaaatccatcccgactattatcaa
atcccggtcgccgaccggcaggccctgatcgaagccgacgaacgcgcccaccgcgaagcc
gaagaagaaaacgagcagcgctccagccgccgccggtcgcggcatcgcagccatcgccgc
cgcaacaacggcgagcgggtgcagagcgagatcgtcgaagccgctaccgacgtcgcggcc
gagcagccccacgaggctgccgaccatcacgaggcgcacgaggccggggctcacgccgag
gccgagcgcttgatgcacgagttgccggagggtgagaccgccgagcagcacgacgccgag
tacgtcgccgatcacgaacacacccacgtcgaagctgctccgtccgagcctcaggtgagc
gctgcggccgagcccgtcacgatcgagcagccggcggttgccgaggctcccgcgccggtc
gaagccccgcaggcagcggcgtcgcacgacgaaaccgacgcgcacgacgacgaccacggc
gaggacagcgcgaactacgccgaggacgcgccgttcccgatcgacgagcaccacgaggcc
gaagacgaacacgaggcgcacgacgatcacgttgaaggcgagcacgaggtcgaaaccgac
tccgacaccgaggcggaagccgaggacgacgaggaagaggatgacgaagaggaagccgag
gaggacgtggtcgagtccgtcggcggtgacgacgtgctcgaggaagtgccggaacgcgcc
ttccgtccgcgccggcagtacaagatccaggaagtcatcaagcgccgccaggtgatgctg
gtgcaggtcgtcaaggaagagcgcggcaacaagggtgctgcgctcaccacctacctgtcg
ctcgccggccgttacgccgtgttgatgccgaacaccgcccgcggtggcggcatcagccgc
aagatcacctcggcccaggaccgctcacggctgaaggaagtggtgcaggacctcgacgtg
ccggaaggcatgggcgtgatcctgcgcaccgccggcgcctcgcgaaccaagcccgagatc
aagcgcgacttcgaatacctgatccggatgtgggagacggtgcgcgacgtcacgctgaac
tcgcaggcgccgaagctggtctatgaagaaggctcgctgatcaagcgctcgctgcgcgac
ctctacaacaaggaaatcgacgaggtgctggtcgccggcgaagccggctatcgcgaagcc
cgcgacttcatgcacatgctgatgccgtcgcaggtgcgtgcggtgaagctgtatcgcgac
ggccagccgctgttctcgcggatgggcgtcgagagccagctcgatgcgatgttctcgccg
accgtgcagcttcgctccggcggctacatcgtcatcaaccagaccgaagcgctggtctcg
atcgacgtcaactccggccgctcgacccgcgagcaccacatcgaggacaccgcgctcaag
accaacatggaagccgccgaggaagtcgcccggcagctccggctgcgcgacctcgccggc
ctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaaccgcgcggtcgagcgt
aagctcagcgactgcctgcggcaggatcgcgcccgcatccaggtcggccgcatctcgcat
ttcggcctgctcgaaatgtcgcgccagcgcatccgcgccagcgtgctggagagctcgacc
gagccctgcccgcattgcggcggctcgggccacgtccgctcggtctcctcggtcgcgctg
cagctgctgcgcggcctcgaagaggtgctgatgaagggcgcgacgcacaacctgatcgtg
cgcacccgcaccgacgtggcgctgtacgtccttaaccacaagcgcggccatctgcgcgac
ctcgagaccggcttccgggtatcgctgtcggtgctggccgatccgaccgtcagcggccag
cagtcgttcgtgatcgaccgcggcgagcaggtccacacgctcgagactgccaaggcgctg
ctcgccgcgcagatcgccgcctccccggcgccgctggacgagcccgaggatgacgacggc
tacgatttcgaagccgagatcgagaccgatgagaccgtcggcctcgccgaggatcagggc
agcgaggccggcgaaagcgaaagcgaaggccgcaagcgtcgccgccgccgccgccgtcgg
cggtcgggcgagccgcgtgaagccgccgaagctggtgcagtgggcgaagatggcgagcag
ccgtttgtttccgaaggcgtcgaacaggtcggcgaagctgacgaaggcgacgaggccggc
gaagacgacagcgacgccgaagcccgggccgaccagggcgagaacggcgaacgccgtccg
cgccgccgcggtcgtcgcggtggccgtcgccgtcgcggcaatgcggaggcgggcgagaac
gaagccggcgtggtcggctcgatcagcgacgagctctccccgacggacgaagcggaagct
gcggacgctgtcgccgacttcgacggcggcagcccctcggtgcaacccagcttcgaaccg
gctgccgaggccgagcagccgcacgacgctcagccgcacgacattgcgccgtccgagccg
cagcacacgacagcgaccgccgcacccgacaccagcgatccgtcggccgaggacgacagc
gcagcgaagaaggccgcgcgtcgccgctccacggtgcgcgaaaaggtgagcttcggcgca
tcggccgccgcctccgaaacgacggcggaagccgcagccgaagtccagcccgagccgacc
gctcaggccgagcagccggccacggccgcgcctgcggtggaagccccggccgccgaggcc
gcgccacaagcggccgcacaacccgcagaggagccctcctcggccgccccgcggcgcgtc
ggctggtggtcccgccgcttcggtggtggcaattaa
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