Rhodopseudomonas palustris CGA009: TX73_016890
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Entry
TX73_016890 CDS
T00153
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpa
Rhodopseudomonas palustris CGA009
Pathway
rpa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TX73_016890 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpa03021
]
TX73_016890 (rpoC)
03400 DNA repair and recombination proteins [BR:
rpa03400
]
TX73_016890 (rpoC)
Enzymes [BR:
rpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TX73_016890 (rpoC)
Transcription machinery [BR:
rpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TX73_016890 (rpoC)
DNA repair and recombination proteins [BR:
rpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TX73_016890 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
WCL93433
UniProt:
A0AAF0BRK8
LinkDB
All DBs
Position
complement(3678673..3682875)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGQLLDMTLKDLERILYFEYYVVLEPGLTDLKERQLLSEEEYLRAQDQYGQDSFTA
MIGAEAIRELLKGLELEKIDAQLRAEMAETDSDIKHKKLAKRLKIVEAFRYSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMREGLPGEGKVFADLAELEHALY
SKVIHLHTKIKYRWHWVNEEGENTVRLLETTAGRILLGQVLPKSPKLPFDVINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFFNAFKAGISFGKDDMVVPGSKWKIVDSTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKEISAVRKAPDGSEQQVNSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQADCGTSLGIKMRAIVDAGTVVASLGSRILGRTA
GEDVRDPATNEIIVKRGDLMEERDVEAIHQAGVQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFDGKIVIKNRAI
ARNGEGHNVAMVRNMVIAIVDPDGTERATHRIQYGARVHVDEGDMVKRGQRIAEWDPYTR
PILTEVEGEIGFEDLIEDQSISETLDESTGIAKRIVIDWRSTRGGADLRPAIVIKGKDGK
VLKLARGGDARYMLSVDAILSVDVGAQVKPGDILARISTESAKTRDITGGLPRVAELFEA
RRPKDAAIIAEIAGTIRFGRDYKNKRRLSIEPLDKNEEAREYLIPKGKHIHLQDGDVVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEI
TDQGDTDMISGEQVDKIEFNALNAKAVEEGKKPATGNPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDRLILDEREKQ
AAIVPAAAPEAEPLSLPPAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaattatgaatctgttcaatccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgtcgccggagaagattctgtcgtggtcgtacggcgagatcaag
aagccggaaacgatcaactaccgcaccttcaagcccgagcgcgacggtctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgactctgtcgcgcgtccgtcgc
gagcgcatgggccacatcgagctggccgcgccggtcgcccacatctggttcctgaagtcc
ttgccgtcgcgtatcgggcagctgctcgatatgacgctgaaggacctcgagcgcatcctg
tacttcgaatactatgtggtgctggagccgggcctcaccgacctcaaggagcgtcagctc
ctgtcggaggaggagtacctgcgcgcccaggatcagtacggccaggattcgttcaccgcc
atgatcggcgccgaagcgatccgtgagctgctgaaggggctcgaactcgaaaagatcgac
gcgcagctgcgcgccgagatggccgagaccgactctgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaagcgttccgctattccggcaacaagccggagtggatgatc
ctcacggtcgtgccggtgatcccgccggatctgcgcccgctggtgccgctcgacggcggc
cggttcgcgacctcggacctcaacgacctgtatcgccgcgtcatcaaccgtaacaaccgc
ttgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgaaaagcgcatg
ctgcaggaagctgtggacgcgctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctcgccgacatgctgaagggcaagcagggccggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctcaagctgcatcagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgacgccaagggtctgtcgaccaccgtcaagcaggccaag
aagctggtcgagaaggagcggccggaggtttgggatatcctcgacgaggtgatccgcgaa
catccggtgctgctgaaccgcgccccgacgctgcatcgtctcggcattcaggcgttcgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctggtgtgctcggcgttcaac
gccgacttcgacggcgaccagatggccgtgcatgttccgctgtcgctcgaagcgcagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctgtactacctgtcgatcatgcgggaa
ggcctgccgggtgagggcaaggtgtttgccgacctcgccgagctcgagcacgcgctgtac
tccaaggtcatccacctccacaccaagatcaagtatcgctggcattgggtgaacgaggaa
ggcgagaacaccgtccgtctgctggagaccaccgccggccgcatcctgcttgggcaggtg
ctgccgaagtcgccgaagctgccgttcgacgtcatcaacaagctgatgaccaagcgcgag
atctccggcgtcatcgaccaggtctatcgccactgcggtcagaaggagacggtgatcttc
tgcgaccggatcatggcgctcggcttcttcaacgcgttcaaggccggcatctcgttcggc
aaggacgacatggtcgtgccgggctcgaagtggaagatcgtcgactcgacccgtacgctg
gcgaaggacttcgagcagcagtacaacgacggtctcatcacccacggcgagaagtacaac
aaggtggtcgacgcctggtcgaaggccaccgaagaaatcgccaaggagatgatgaaggag
atctccgcggttcggaaggcgcctgacggctccgaacagcaggtcaactcgatctacatg
atggcccactccggtgcgcgtggttcgcccgcgcagatgcgtcagctcgccggtatgcgc
ggcctgatggccaaaccgtcgggtgaaatcatcgagacgccgatcatttccaacttcaag
gaaggtctgtcggttctcgagtacttcaactcgacccacggcgcccgtaagggtctggcc
gacaccgcgctcaagaccgcgaactcgggttacctgacccgtcgtctggtcgacgtggcg
caggactgcatcatcacgcaggccgactgcggcacctcgctcggcatcaagatgcgggcg
atcgtcgacgccggcaccgtggtcgcctcgcttggcagccgtattctcggccgcaccgcg
ggcgaggacgtgcgcgacccggccaccaacgagatcatcgtcaagcgcggtgatctgatg
gaggagcgggacgtcgaggcgatccaccaggccggcgtgcaggaagtgaagatccgctcg
gcgctgacctgcgagctggtcaacggcatctgcggcaagtgctacgggcgcgatcttgcc
cgcggtactccggtcaaccacggcgaagcggtcggcgtcatcgcggcgcagtcgatcggt
gagccgggcacccagctgacgatgcgtaccttccacatcggcggtgcggcgcagatcaac
gagcagtcggtgatcgagtcgaacttcgacggcaagatcgtcatcaagaaccgcgccatc
gcccgtaacggcgaaggccacaatgttgcgatggtccgcaacatggtgatcgcgatcgtc
gatccggacggcaccgagcgtgcgacccatcgtatccagtacggcgcgcgcgtgcacgtc
gacgagggcgatatggtcaagcgcggccagcgcatcgccgagtgggacccgtacacccgg
ccgatcctgaccgaggtcgagggcgagatcgggttcgaggacctgatcgaggatcagtcg
atctccgaaacgctcgacgagtcgaccggtatcgccaagcgtatcgtcatcgattggcgc
tcgacccgcggcggcgcggacctgcgtccggcgatcgtgatcaagggcaaggacggcaag
gtgctgaagctggcgcgtggcggcgacgcccgctacatgctgtcggtcgacgccattctg
tcggtcgacgtcggcgcccaggtcaagcccggcgacatcctcgcgcgtatctcgaccgag
agcgccaagacccgtgacatcaccggcggtctgccgcgggtggcggagctgttcgaggcg
cggcggccgaaggatgcggcgatcatcgccgagatcgccggcaccatccggttcggtcgc
gactacaagaacaagcgccggctctcgatcgagccgctcgacaagaacgaggaagcgcgc
gagtacctgatcccgaagggcaagcacatccacttgcaggacggcgacgtcgtcgaaaag
ggcgacttcatcgtcgagggcaatccggcgccgcacgacatcctggcaatcaagggcatc
gaggaactcgctgcctatctcgtcaacgaaatccaggaggtctatcgactccagggcgtg
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgagatc
accgaccagggcgataccgacatgatctcgggcgagcaggtcgacaagatcgagttcaac
gcgctcaacgccaaggcggtcgaggagggcaagaagccggcaaccggcaatcctgtgctg
ctcggtatcaccaaggccagcttgcagacccgctcgttcttctcggcggcgtcgttccag
gagaccacccgggtgctcaccgaagccgcggtcaacggcaaggtggatccgctggaaggc
ctcaaggaaaatgtcatcgtcggccggctgatcccggcgggcaccggcgcctcgatggcc
aagatccgcgaagtggcggtgaagcgcgatcggctgattctcgacgagcgcgagaagcag
gcggcgatcgttccggccgctgcgccggaagccgaaccgctgtcgctgccgccggcagag
taa
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integrated database retrieval system
