Ruminiclostridium papyrosolvens: P0092_01840
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Entry
P0092_01840 CDS
T08965
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpay
Ruminiclostridium papyrosolvens
Pathway
rpay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0092_01840 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpay03021
]
P0092_01840 (rpoC)
03400 DNA repair and recombination proteins [BR:
rpay03400
]
P0092_01840 (rpoC)
Enzymes [BR:
rpay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0092_01840 (rpoC)
Transcription machinery [BR:
rpay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0092_01840 (rpoC)
DNA repair and recombination proteins [BR:
rpay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0092_01840 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
PIN_12
RPOC_hybrid
DUF3884
Motif
Other DBs
NCBI-ProteinID:
WES34745
LinkDB
All DBs
Position
411751..415248
Genome browser
AA seq
1165 aa
AA seq
DB search
MFELNNFDSIKIGLASPEKVREWSKGEVKKPETINYRTLKPERDGLFCERIFGPQKDWEC
HCGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEKILYFASYVVIDPGQTPLSKKQVLTEKEYRDSVDKFGMNFRAAMGAEAVKELLA
EIDLESMSKELRAELADSTGQKRIRAVKRLEVSEAFRLSGNRPEWMILDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKIFQCGLPKE
MALELFKPFVMKKLVNDGLAHNIKSAKRMVERVRNEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRALKLHPLVCSAYNADFDGDQMAVHVPLSAEAQSEARFLMLSANNLL
APKDGKPITVPTQDMVLGSYYLTIEKPNEPGDGKVFCDMNEVLMAYQEGVLGLHAQIKVR
IEKEINGVNMRKVISCTPGRLIFNEAIPQDLGFVDRSDESKLFDLEINFLVGKKELGKII
DKCIRVHGTTKTAVILDKIKALGFKYSTRGAITISVSDMVIPEIKKQYLQETENTIDNIV
KQYKRGLISDEERYNSVISTWTETGESITKALIDNLDRFNPVYMMSQSGARGNINQIKQL
AGMRGLMADTSGKTIEIPIKSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVRELDCGTDKGIEVYDIKDGGEIIEPLSERLVGRYLTEDMYDPSTKELIASK
DEAIDEKKASIIAKSGVKKVRIRSVLTCHSEVGVCAKCYGANLATGGAVNVGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKGLAIISEIAGSVKLSESK
KKREVIITSEDGESKSYQIPYGSRIKVYDADIVEAGDELTEGSVNPHDILKIKGIKGVQA
YLLQEVQRVYRMQGVDINDKHIEVIVRQMMRKVKIEDAGDTSLLPGGLVDIFEFEKENQK
ALDAGLSPATGERTLLGITKASLATDSFLSAASFQETTRVLTEAAIKGKIDPLVGLKENV
IIGKLIPAGTGMSRYKDISISSVVE
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaactgaacaattttgattctataaaaataggattagcttctccggaaaaggtc
agagaatggtcaaaaggtgaagtaaaaaagcctgaaactataaattacagaactttgaag
cctgaaagagacggtttgttctgcgaaaggattttcggtcctcaaaaggactgggaatgt
cattgcggtaaatacaaaagaattagatataagggaatagtttgtgaccgttgtggtgtt
gaagttacaaggtcaaaagtaagaagagaaagaatgggacatattgagcttgccgctcct
gtatcacatatctggtacttcaagggaataccaagcagaatgggtttgattcttgatatg
tctccaagatcccttgaaaagatactgtattttgcatcatatgttgttattgacccgggt
cagacaccattgtcaaaaaaacaggtattaacagaaaaggaatatagagacagcgttgac
aagtttggaatgaatttcagagccgctatgggagctgaagctgtaaaggaattgcttgct
gagattgatctcgaaagtatgtccaaggagttaagagctgaacttgctgattcgacagga
cagaagagaatcagagcggttaagagacttgaggtttctgaggcattcagattgtccgga
aaccgtcctgaatggatgattcttgatgtagttcccgtaattccgcctgaactcagacca
atggttcagttggatggaggaagatttgctacatcagatttgaatgatctgtacagaagg
gttataaacagaaataacagattaaaaagactccttgatttaggagctcctgacataatt
gtaagaaatgaaaaacgtatgcttcaggaagcagttgatgcattaatcgataatggtaga
agaggacgtcctgtaacaggacccggtaacagacctcttaaatcactttcagatatgctt
aagggtaagcagggtcgtttccgtcagaatcttctgggtaagcgtgttgactactcagga
cgttcagttatcgttgtaggacctgatttgaaaatattccagtgtggtctgccaaaagag
atggcgttggaactgttcaagccttttgtaatgaagaagcttgttaatgatggcttggca
cataatataaaaagtgcaaagagaatggttgaaagagtaagaaatgaagtatgggacgtt
cttgaagaagtaataaaagagcatcctgtgctactgaaccgtgctcctacgcttcacaga
cttggtattcaggcatttgaacctgtactggttgaaggaagagcgttaaagcttcatcct
ttggtatgttcagcgtacaatgctgactttgacggtgaccagatggcggtgcatgttcct
ctgtcagcagaagctcaatcagaggcaagattcctgatgttgtctgcaaataacttgttg
gcacctaaggacggtaaacctattaccgtaccaacacaggatatggtcttgggtagttac
tatctgacaatagaaaagccaaatgagcccggtgacggaaaagtattctgtgatatgaac
gaagttcttatggcgtatcaagaaggtgttcttggtcttcatgcacagataaaggttcga
attgaaaaggaaataaacggtgtgaacatgagaaaagttatcagttgtacaccgggcaga
cttattttcaatgaagcaattccgcaggatcttggttttgtagacagaagtgacgagagc
aagttgtttgacctggaaatcaatttccttgtaggtaagaaagagcttggaaaaattata
gacaaatgtataagggtgcatggtactaccaaaacagccgttatacttgacaagataaag
gcattgggctttaagtactccacaagaggtgctatcacaatcagcgtatccgatatggta
atacctgagataaagaagcaatacttgcaggagactgaaaatactattgataatatcgtt
aagcagtataagagaggactgatttcagatgaagaaagatataactctgtaatcagtact
tggacagaaacaggtgagagtatcactaaagcccttattgataaccttgacagattcaat
cctgtgtacatgatgtcacagtcaggagcgagaggtaatatcaatcagattaagcagctg
gccggtatgagaggtctgatggcggatacatccggtaagaccatcgagataccgattaag
tcaaacttccgtgaaggtcttaacgttttggaattctttatttcaactcatggagccaga
aaaggtttggccgatactgcacttagaaccgctgactcaggttacctcacaagacgtctt
gttgacgtaagtcaggatgttatagtaagagaacttgattgcggtactgacaagggtata
gaagtttacgacatcaaggacggcggagaaataatcgaaccgctatccgagagacttgta
ggaagatatttaactgaagatatgtatgaccctagtacaaaggagttaatagcatctaaa
gacgaggctattgacgagaagaaggcttccataatagctaagtcaggtgttaagaaggta
agaatcaggtcagtgcttacttgccattcagaggttggcgtatgtgccaagtgttatggt
gctaaccttgcaacaggcggtgcggtaaacgttggtgaggcagttggtataatagctgca
cagtcaatcggtgaaccgggtacacagttgacaatgagaaccttccataccggtggtgtt
gccggtgatgacattacacagggtctccctcgtgtagaggaattgtttgaagccagaaag
ccaaagggacttgcaataatatctgaaatagcaggtagtgttaagctttcagaatctaag
aagaagagagaagtaattattacttctgaagacggtgaatccaaatcctaccagatacct
tatggttcaagaatcaaggtatatgacgcagatattgttgaagccggagatgaattaacc
gagggttcagtaaatcctcatgatatccttaaaatcaagggcatcaagggcgttcaggct
tatcttcttcaggaagttcagagagtttacagaatgcagggtgttgatatcaacgataag
catattgaagtaattgtaagacagatgatgagaaaagttaagatagaagatgcaggagat
accagcttgcttccgggaggactcgttgacatattcgagtttgagaaggaaaatcaaaag
gctcttgatgcaggtcttagccctgcaactggtgagcgtactcttctgggtatcacaaag
gcttcacttgctaccgattcattcttgtctgccgcttctttccaggaaaccacaagggtt
cttacagaagctgcaattaagggtaagattgatcctcttgtaggattaaaggaaaatgtt
atcattggtaagctaatacctgcgggtaccggtatgagccgttacaaggatataagtatt
agcagtgtagttgaataa
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