Ruminiclostridium papyrosolvens: P0092_13410
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Entry
P0092_13410 CDS
T08965
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rpay
Ruminiclostridium papyrosolvens
Pathway
rpay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0092_13410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpay03019
]
P0092_13410
03009 Ribosome biogenesis [BR:
rpay03009
]
P0092_13410
Enzymes [BR:
rpay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P0092_13410
Messenger RNA biogenesis [BR:
rpay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P0092_13410
Ribosome biogenesis [BR:
rpay03009
]
Prokaryotic type
rRNA helicases
P0092_13410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WES32753
LinkDB
All DBs
Position
complement(3001780..3003225)
Genome browser
AA seq
481 aa
AA seq
DB search
MNPSFIDYKLSNEILKAISMLNFKSPTKVQEKVIPAVIEKKDIIVKSQTGSGKTAAFAVP
ICELVEWDENKPQALVLTPTRELAIQVKEDIFNIGRFKRLKVSAIYGKSPFYNQEKELKQ
KTHVVVGTPGRIIDHIERNTFDTSNIKYLVIDEADEMLHMGFIEQIETIVSSLSKERVTV
LLSATMPIDIETLCNKYMKEPIRVEIEEQNTTTDRVHQERYDVERASKIKLLRDITIVEN
PDSCIIFCNTKQKVDDVYDRLLLFKYSCEKIHGGMDQRDRLKVMNDFKRGYFRYLIATDV
AARGIDIDNISLVINYDIPQDGETYVHRIGRTGRIGRDGKAISFVTEDESKYLNDINQYI
GKEIILKEKPDRETVNNLKQEFSEKIVTAPEIKETKGVHLNKEIMKLHINAGKKTKMRPV
DIVGTLCNIKGMTAEDIGIINILDVSTFVEILNNKGELVYKELQKTPIKGRLRKVSKTMD
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatcttttattgattataaattgagtaatgaaatattaaaagcaataagcatg
ttgaattttaaaagtccaacaaaggttcaagaaaaggttataccggctgttatagagaaa
aaggacattatagtaaaatcccagacagggagtgggaaaacagctgcctttgctgttccc
atctgtgagttggtagagtgggatgaaaataaacctcaggcattagtgcttacaccaaca
agagaacttgctatccaagtgaaggaagatatatttaatataggtagattcaaaaggctt
aaagtatcagcaatttacggcaaatctcctttctataatcaggaaaaggaactcaagcaa
aaaacccatgtggtagttggaacaccgggacgtattatagaccatatcgaaagaaatacc
tttgatacatcaaatataaaatatcttgtaatagatgaagctgatgaaatgctccatatg
ggatttattgaacaaatagaaaccatagtgtcaagtctttcaaaagaacgtgtaacagtg
ctattatcagcaacaatgccgatagatatagagaccctatgcaataaatacatgaaagag
ccaatacgtgttgaaatcgaggagcaaaatacaacgacagacagggtacatcaggagaga
tatgatgtagaaagggcaagtaaaataaaacttttaagagatataacaatagtagaaaat
ccggatagctgtataatattttgtaatacaaagcaaaaggtagatgatgtatatgataga
cttctactgtttaaatattcctgtgaaaaaattcatgggggaatggaccagcgtgacaga
ttaaaggtaatgaatgacttcaagcgtggatatttcagatatctgatagctacagatgtt
gctgccagagggatagatatagacaacatttcactggtaattaattatgatattccacaa
gatggtgaaacatatgtacacagaataggaagaaccgggcgtataggcagggatggcaaa
gctatatcttttgtaacagaagatgaaagtaagtatctgaatgatataaatcaatacatt
ggcaaagagattatactaaaagaaaagcccgatagagaaaccgtaaataatttaaaacag
gagttttctgagaaaatagttactgcacctgaaattaaagaaacaaagggagtgcatctt
aataaagagattatgaaattacatatcaatgcaggaaagaaaacaaagatgcggcctgtg
gacattgtaggaacactctgcaatataaaaggtatgacagctgaagatataggtatcata
aatatacttgatgtatctacctttgtagaaatactgaacaataaaggtgagctggtttat
aaggaactgcagaaaacacctataaaaggaagacttcgcaaggtaagcaaaacaatggat
gcataa
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