Ruminiclostridium papyrosolvens: P0092_13840
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Entry
P0092_13840 CDS
T08965
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rpay
Ruminiclostridium papyrosolvens
Brite
KEGG Orthology (KO) [BR:
rpay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpay03032
]
P0092_13840 (topA)
03400 DNA repair and recombination proteins [BR:
rpay03400
]
P0092_13840 (topA)
Enzymes [BR:
rpay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
P0092_13840 (topA)
DNA replication proteins [BR:
rpay03032
]
Prokaryotic type
DNA Topoisomerases
P0092_13840 (topA)
DNA repair and recombination proteins [BR:
rpay03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
P0092_13840 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
DNA_ligase_ZBD
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
WES32838
LinkDB
All DBs
Position
complement(3090276..3092399)
Genome browser
AA seq
707 aa
AA seq
DB search
MADNLVIVESPGKVKSISKFLGKGYKVEASVGHVRDLPKSQMGVDIDNDFDPKYITIRGK
GDVISKLKKEAKAAKKVFLATDPDREGEAISWHLAKILNIDEKQKCRVSFNEITQNAVKN
AVKQPRTIDMGLVDAQQARRVLDRIVGYKISPLLWKKVKKGLSAGRVQSVATKMICDRED
EIENFESQEYWSITAKLSKPKASPNFEARFYGIGKEKMELTNEEQVNSILAEINKSQYIV
QKVKEQEKKRAAAAPFITSTLQQEASRKLGFTTKRTMMVAQQLYEGIEIKGHGSVGLITY
MRTDSTRISTEAQNEAREYIKTKYGQDYIPENPRVYKNKSASQDAHEGIRPTYMDMAPEG
LKEFLSAEQYKLYKLIWDRFISSQMSSAIYDTVAADITAGKYMFKANGSKVKFPGFMVLY
IEGNDVEGKEEDGEQNEKENTLPQLNEGDILELKKNTPKQHFTQPPARYTEATLVRALEE
KGIGRPSTYAPTITTILSRGYVLKEKKLLVPTELGKIVNDIMKNHFENIVDTKFTAQMES
ELDDVEDGNKEWKAVMRDFYSSFAGVLKEAEESIGDVELPVEVSDVQCDKCGRFMVVKHG
RFGKFLACPGFPECRNTKPIVEEAGVECPLCKGKVLIKKTKKGKKYIGCERNPECSFMSW
DMPSPNKETCPVCGAFMLQKSSGKKKVLKCSNDKCSSNTETSKDTAK
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atggctgataacctggttattgtggagtctcccggaaaagttaaatctataagcaaattt
ttaggtaagggatataaggtagaggcttctgtcgggcatgttagggacttacctaaaagt
cagatgggtgttgatattgataatgattttgatcccaagtatattactataagaggcaag
ggcgatgttatatcaaagctgaaaaaagaagccaaggcagcaaaaaaagtgtttctcgca
actgaccctgaccgtgaaggtgaggcgatatcctggcacttggccaaaattttaaatatt
gatgaaaagcagaagtgtagagtttcttttaacgaaataactcaaaacgctgtaaagaat
gcagtaaaacagccaagaacaatagatatgggccttgttgatgcacagcaggcaagaaga
gtactggacagaatagtgggatataagataagtcctctgctttggaagaaagttaaaaaa
ggtttgagcgcaggtagagtacaatctgtagctacaaaaatgatttgcgacagggaagat
gaaatagaaaattttgagtcgcaggaatattggtcaataacggcaaaactttcaaaaccg
aaagcgagtccgaattttgaagcaagattctatggcataggcaaggaaaaaatggagtta
acaaatgaggaacaggttaattctattttagctgaaataaataaaagccaatatattgta
caaaaagttaaagaacaggaaaagaaaagagcagctgcagcaccttttattaccagtaca
ttgcagcaggaagcttctagaaaactgggctttacaacaaagagaactatgatggttgct
cagcagctatacgaaggtattgaaataaagggccatggctctgtgggtcttataacctat
atgagaacagactcaacaaggatatcaactgaagcacagaacgaggccagagaatatata
aagacaaagtacggacaggattatatacctgaaaatccaagggtatataaaaataaatca
gcatctcaggatgctcatgaaggtatccgtccgacatatatggatatggcacctgaggga
ctgaaggaatttctaagtgctgaacaatacaagctctacaagcttatatgggacagattt
atatcaagtcagatgtcatctgccatatacgacactgtagcagctgatattaccgcaggg
aaatatatgttcaaagccaatggctccaaagtaaaatttccgggctttatggtgttgtac
attgaaggtaatgatgttgaaggcaaggaggaagacggagagcagaatgaaaaggaaaac
actctgccacagctgaatgaaggagatattcttgaattgaaaaagaatacgccaaagcag
cattttacgcaacctcctgccagatacaccgaggcaacccttgtaagggccttggaagaa
aaagggataggaagaccaagtacttacgcccctacaattacaactattttatcacgtggt
tatgttttgaaggaaaagaagttgctggtaccgactgagcttggaaaaattgtaaatgac
ataatgaagaaccattttgaaaacattgttgatacaaaatttactgcacagatggaaagc
gaactggatgatgttgaggacggtaacaaagaatggaaggccgtaatgagggatttttat
tcttcatttgcaggagtgcttaaagaggccgaagaatcaataggcgatgttgagttacct
gtggaagtgtcagatgtacaatgtgataagtgcggaaggtttatggtggtaaaacatggt
agatttggaaaatttcttgcttgtccgggatttcctgaatgcagaaatactaaacctatt
gtagaagaagctggggtggagtgtccgctttgtaagggaaaggtactcattaaaaagact
aaaaaaggtaaaaagtatattggttgtgaaagaaatccggaatgttcatttatgagctgg
gatatgcctagtcctaataaggaaacgtgtcctgtgtgcggagcatttatgcttcaaaaa
tcctccggtaaaaagaaggttcttaaatgcagcaatgacaagtgttccagtaatactgaa
acctcaaaagatactgccaagtaa
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