Ruminiclostridium papyrosolvens: P0092_21585
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Entry
P0092_21585 CDS
T08965
Symbol
helD
Name
(GenBank) RNA polymerase recycling motor HelD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpay
Ruminiclostridium papyrosolvens
Pathway
rpay03420
Nucleotide excision repair
rpay03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P0092_21585 (helD)
03430 Mismatch repair
P0092_21585 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpay03400
]
P0092_21585 (helD)
Enzymes [BR:
rpay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P0092_21585 (helD)
DNA repair and recombination proteins [BR:
rpay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P0092_21585 (helD)
MMR (mismatch excision repair)
Other MMR factors
P0092_21585 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
DEAD
Viral_helicase1
ResIII
PHP
SLFN-g3_helicase
AAA_30
NACHT
AAA_11
CCDC-167
Motif
Other DBs
NCBI-ProteinID:
WES34314
LinkDB
All DBs
Position
complement(4923045..4925327)
Genome browser
AA seq
760 aa
AA seq
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MSAANHPAYKEELERCRYTLDYVEKSLKKALEKREKIGNELESVQKHMSGDSSADYTSIM
VNTMLHDTLALKVKNLYTARGKPYFARVDYKENDSDRTEKLYIGKMSLSRDEDQEIVIVD
WRAPIANLYYEGRLGPSSYECPDGIINGELLLKRQFSINNGSLDEIFDIDITTNDEFLQT
YLGANAENRLKEIVSTIQEEQNKIVRAPMWKPLIVQGVAGSGKTTIALHRIAYLIYTFEK
SFDPENFMIIAPNRLFLNYISEVLPELGVDRVKQTTFEEFSMELIGKKFKLRDANEKLNM
FVNHNVTEEQIMHNNLVRGSSILKTSMDFKDIIDEYLKEIELSFIPKKDITLGTKVIFSY
EELNNLFLTQYGMWPIAQRMNEIKKSIKTRLKTSKDQFIQQIHAECDKKVARARAGIADA
SERQRCILEAFEKRDRVLEKIEKAAKSLIKDYVASLPKLSPYQYYVDLMKNTEVFNRIVA
KYTDEETCKFIREYTLDILNSGGIEQEDLAPIIYLKYKVYGMDEKIPVRHIVIDEAQDFS
AFQFYVMKKIVKDSSFTILGDLCQGIHFYRGVRNWDEVVNNVFEGKKCEFLTLEQSYRTT
VEIMEAANNVMEKLDNKDLVRAKPVIRHGEPVEYIQKNDISDVAADIVEKIEQAKKLGHK
TIAVICKTMEECSQILPMIKKADKNISIITGNEKEYKSGIVVVPSYLSKGLEFDVVLISN
ASSEYYTKSDLDIKLLYVAMTRPLHKLCIYHTGEISNLLR
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctgcaaaccatccggcctataaggaagagcttgaaaggtgcagatatactctg
gactatgtggagaaaagcctgaaaaaagctcttgaaaagagagaaaagattggtaatgaa
cttgaaagtgtacaaaagcatatgagtggtgacagtagtgccgattataccagtataatg
gtaaatactatgctgcatgatactctggctttaaaggttaaaaatttatatactgccaga
ggtaagccgtattttgccagggtagattataaggaaaatgattctgataggacagaaaag
ctgtatataggaaaaatgtcgctatccagggatgaagaccaggaaatagttatcgtagac
tggagggcaccaattgcaaacctttattacgagggtagacttggcccgtcaagctatgaa
tgcccggatggtataattaatggagaacttcttttaaaaagacaattctcaattaataat
gggagtctcgacgaaatttttgacatagacataacaacaaatgatgaatttcttcaaaca
tatcttggggcaaatgcagaaaacagacttaaagaaattgtatcaacaattcaggaggag
cagaacaaaatcgtaagagctccaatgtggaaaccgctgattgtccaaggggtagcaggt
agtggtaagactactattgcacttcatagaatagcatatcttatatatacgtttgaaaaa
agttttgatcctgagaattttatgattattgctccaaacagactttttctaaactatatt
tcagaggtattacctgaacttggagttgatagggttaagcaaacaacttttgaggagttt
tctatggagcttatagggaaaaagtttaagctcagagatgcaaatgaaaagttaaatatg
tttgttaatcataatgtgacagaggagcagattatgcataataatcttgtaagaggttct
tcaattctaaaaacctctatggacttcaaagacattattgatgaatacttaaaggagatt
gagctatcttttattcctaaaaaggatattactcttggtactaaagttattttttcctat
gaagaattaaataatttgtttttgacccaatatggcatgtggcctattgcacaaaggatg
aatgagattaagaaaagtattaaaacaaggttaaaaacaagtaaggaccagtttattcag
cagatacatgctgaatgtgacaaaaaggtagcaagggcaagggctggtattgcagatgcg
tctgaaaggcaaagatgtatactggaagcttttgaaaaaagagaccgtgttttagagaag
attgaaaaagcagcaaaatctttaatcaaggattatgtagccagtctgccaaaattaagt
ccctaccaatactatgttgatttgatgaaaaatacagaggttttcaataggattgtggcc
aaatacactgacgaagagacatgtaaatttattagagagtatactcttgatatattaaat
agcggtgggattgagcaggaggatttggcacctataatatatctaaaatataaggtttac
ggtatggatgagaaaatacccgtcaggcatattgtaattgatgaagctcaagatttcagt
gcgtttcagttctatgttatgaaaaaaattgttaaggacagttcttttaccattctcggg
gatttatgtcaagggattcatttttacagaggggtgcgtaactgggacgaggttgttaat
aacgtttttgagggtaaaaagtgcgagtttttaaccttggagcaaagttacagaactact
gttgaaattatggaggctgccaataacgttatggagaaactggataataaggatttggta
cgtgccaaacctgttatcagacatggagaacccgttgaatacattcagaagaatgacatt
tctgatgtggccgcagacatagttgaaaagattgagcaggcaaaaaagctaggacataaa
acaatagcggttatatgtaaaaccatggaagagtgtagtcaaatactgcctatgataaag
aaggctgataaaaatataagtattattacaggaaatgagaaggaatataaaagcggtatt
gtagtggttccatcttatttgtccaagggtctggaatttgatgtggtacttatttcaaat
gccagcagcgaatattatacaaaaagtgaccttgatattaagctgctttatgtagctatg
acaaggcctttgcacaaactttgtatttatcatacaggagaaatttcaaatctgctaaga
taa
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