Rhodopseudomonas palustris HaA2: RPB_1793
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Entry
RPB_1793 CDS
T00321
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpb
Rhodopseudomonas palustris HaA2
Pathway
rpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPB_1793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpb03019
]
RPB_1793
Enzymes [BR:
rpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPB_1793
Messenger RNA biogenesis [BR:
rpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPB_1793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
ABD06501
UniProt:
Q2IZ59
LinkDB
All DBs
Position
complement(2052451..2053926)
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AA seq
491 aa
AA seq
DB search
MERTNLLTSFQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVGIAQTGTGKTA
SFALPILHRILENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSATLAIGGVP
MGRQVRSLMQGVEVLVATPGRLLDLVQSNALRLGQVEFLVLDEADRMLDMGFINDIRKIV
AKLPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAKPA
MLATILQQDGVNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTG
ELRTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGTAISLCAGGEE
TGYLRDIEKLIRIALPKEDHRTPGAKPAPSTAPQRGGQRNGQQRNGQQRSGGQRNGAAPH
AARGDAAPGSNDPRRPRRAGGPNAGRNPDAARHEPAVRPQHGGQAEGLQGVAFLQRKNDR
PAKTTNQRPQR
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaaccaatcttttgacctcgtttcaggatttcggcctcgccgatcccatctcc
cgtgcgcttcaggaagaaaattacaccgtcccgacgccgatccaggcgcagaccattccc
ctcgccctcgccggtcgcgacgtcgtcggcatcgcccagaccggcaccggcaagaccgcg
tccttcgcgctgccgatcctgcaccgcatccttgaaaaccgcatcaagccgcagccgaag
acctgccgcgtcctggtgctgagcccgacccgcgaactctccgggcagatcctcgacagc
ttcaacgcctatggccgccacatccgcctcagcgcgacgctggcgatcggcggcgtgccg
atgggccgccaggtccgctcgctgatgcagggcgtggaagtgctggtcgccaccccgggc
cgcctgctcgacctcgtgcagagcaacgcgctgcgcctcggccaggtcgagttcctggtg
ctcgacgaagccgaccgcatgctcgacatgggcttcatcaacgacatccggaagatcgtc
gcgaaactcccgatcaagcgccagacgctgttcttctcggccaccatgccgaaggacatc
gccgacctcgccgagcagatgctgcgcgatccggcccgcgtcgcggtgacgccggtggcc
tccaccgtcgagcgcatcaaccagcgcgtgatccatctcgatcactccgccaagccggcg
atgctcgccaccatcctgcagcaggacggcgtcaaccaggcgctggtgttcacgcgcacc
aagcacggcgccgacaaggtggtgaagggcctgcagcgcgccggcatcaccgccgacgcc
atccacggcaacaaatcgcagaactatcgcgagcgcgtgctcgcggcgttccgtaccggc
gaactgcgcacgctggtcgccaccgatatcgccgcccgcggcatcgatgtcgacggcgtc
tcccacgtcgtcaatttcgacctgccgaacattcccgagacctacgtccaccggatcggc
cgcaccgcgcgcgccggcgccgagggcaccgcgatctcgctgtgcgccggcggcgaagag
accggctatctgcgcgacatcgagaagctgatccggatcgcgctgccgaaggaagaccat
cgcaccccgggcgcgaagcccgcgccgtccaccgcgccgcagcgtggcggccagcgcaac
ggccagcagcgcaatggccagcagcgcagcggcggccagcgcaacggcgccgcaccgcac
gcggcccgcggcgacgctgctcccggatcgaacgacccgcgccgcccgcgacgcgccggc
ggcccgaatgccggacgcaacccggacgcggcccggcacgaaccggcggtacggccccag
cacggcggacaggccgaaggcctgcagggcgtcgcatttttgcagcgcaagaatgatcgc
cccgcaaagaccaccaatcaacgcccgcaacgctga
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