Rhodopseudomonas palustris HaA2: RPB_2078
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Entry
RPB_2078 CDS
T00321
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rpb
Rhodopseudomonas palustris HaA2
Pathway
rpb00300
Lysine biosynthesis
rpb00470
D-Amino acid metabolism
rpb01100
Metabolic pathways
rpb01110
Biosynthesis of secondary metabolites
rpb01120
Microbial metabolism in diverse environments
rpb01230
Biosynthesis of amino acids
Module
rpb_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rpb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RPB_2078
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RPB_2078
Enzymes [BR:
rpb01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RPB_2078
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Ortholog
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
ABD06784
UniProt:
Q2IYC6
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All DBs
Position
2361791..2363077
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AA seq
428 aa
AA seq
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MSAPAAFDPDRVATLAARHGTPLFIYDAPAMRAAAARLQEALPPGARLFFAVKANPAPDV
IRLFAGEGLGAEVASGGELRLALACGVAPDRIVFSGPAKTAPELRCAIEACIFAVQAESV
AELDTLQALCVARGATVRVALRVNLGPGGERRGGWGGPSPFGMDTDALDEVTARAARLDR
LRIVGLHNHQASQTLDPAKLIARFDAFARVAASLGSRFDLQFVNFGGGFGAPFYADDAPL
DLAPVRACFAALAGVFGDRPLQFAAESGRYLVGPAGCYVARVVDVKRSFGVRYALLDGGI
HHVLGLSGTMRSLRRPVAVARVGARSGEPCEPTEIAGPLCTPIDRLAGAAELPCDLAAGD
LLAFANCGAYAKHASPLNFLGHDWPAELMIDGARVIVLSPQIAFGPALWQSREVLQRFRC
DGKIPTSS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccccggccgcgttcgatcccgatcgggtcgcgacgctcgccgcgcgccacggc
acgccgctgttcatctacgacgcgccggcgatgcgcgccgccgcggcgcgattgcaggag
gcgctgccgccgggcgcgcgattgttcttcgcggtgaaggccaatcccgcgcccgatgtg
atccggctgttcgccggcgagggcctcggcgccgaagtggcgtcgggcggcgaattgcgg
ctcgcgctcgcctgcggcgtcgcgccggatcgcatcgtgttctccggcccggcgaagacc
gcgccggagctgcgctgcgcgatcgaggcctgcatcttcgcggtgcaggcggaatccgtc
gccgagctcgacacgctgcaggcgctgtgcgtcgcgcgcggcgcgacggtgcgcgtcgcc
ctgcgcgtcaatctcgggccgggcggcgaacgccgcggcggctggggcgggccttcgccg
ttcggcatggataccgacgcgctggacgaggtcacagcgcgcgccgcgcggctcgatcgt
ctgcgcattgtcggcctgcacaatcaccaggcgtcgcagacgctcgatccggcgaagctg
atcgcgcggttcgacgcctttgcgcgcgtggcggcgtcgctcgggtcgcgcttcgatctg
cagttcgtcaatttcggcggcggcttcggtgcgccgttctacgccgacgacgcgccgctc
gatctcgcgccggtccgcgcgtgtttcgccgcgctcgccggcgtgttcggcgaccggccg
ctgcagttcgccgccgaatccgggcgctatctcgtcgggcccgcgggctgctacgtcgcg
cgcgtggtcgatgtgaagcggtcgttcggcgtgcgctacgcgctgctcgacggcggcatt
catcacgtgctcggcctgtccggaacgatgcggtcgctgcgccggccggtggcggtggcg
cgggtcggcgcgcgatcgggggagccttgcgagccgaccgaaatcgccgggccgctgtgc
acgccgatcgatcgcctcgccggcgccgccgagctgccgtgcgatctcgccgccggcgac
ctgctggcgttcgccaattgcggagcctatgccaagcacgcgagcccgctgaacttcctc
ggccacgactggccggccgaactgatgatcgacggcgcgcgcgtcatcgtcctgtcgccg
caaattgcattcgggccggcgctgtggcaatcacgcgaggtactccagcgatttcgatgc
gatggcaaaatccccacgagctcctga
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