Rhodopseudomonas palustris HaA2: RPB_2286
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Entry
RPB_2286 CDS
T00321
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rpb
Rhodopseudomonas palustris HaA2
Pathway
rpb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPB_2286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpb03021
]
RPB_2286
03400 DNA repair and recombination proteins [BR:
rpb03400
]
RPB_2286
Enzymes [BR:
rpb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPB_2286
Transcription machinery [BR:
rpb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPB_2286
DNA repair and recombination proteins [BR:
rpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPB_2286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Peptidase_M23
RnfC_N
ApbA_C
DUF2130
PspA_IM30
Motif
Other DBs
NCBI-ProteinID:
ABD06991
UniProt:
Q2IXR9
LinkDB
All DBs
Position
2638678..2642880
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGQLLDMTLKDLERILYFEYYVVLEPGLTDLKERQLLSEEEYLRAQDQYGQDSFTA
MIGAEAIRELLKGLELEKIDAQLRVEMAETDSDIKHKKLAKRLKIVEAFRFSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSILREGLPGEGKVFGDLAELEHALF
SKVIHLHTKIKYRWDSLDDEGKPYQRLIETTAGRILLGQVLPKSVKLPFEVINKLMTKRE
ISSVIDQVYRHCGQKETVIFCDRIMALGFFNAFKAGISFGKDDMVVPASKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKEISAVRKNASGAETQVNSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQDDCGTSLGIKMRAIIDAGTVVASLGSRILGRTA
GEDVRDPQTNEVIVKKGQLMEERDVEAIHQAGVQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFEGKVVIKNKAI
ARNGENHSVAMVRNMVVAIVDPDGTERATHRIQYGARMHVDEGDTVKRGQRIAEWDPYSR
PVLTEVEGTIDFEDLVEDQSISETLDESTGIAKRIVIDWRSTRGGADLRPAIVVKGKDGK
VLKLARGGDARYMLSVDAILSVDVGAKVKPGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDSEEEAREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TDQGETDMISGEQIDKIEFDQLNAKARDEGKKIATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKLREVAMKRDRMILDEREKQ
ATIVPPAAPEAEPLALPPVE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaaatcatgaatctgttcaatccgacgacgccggctcaggtcttcgaccag
atccggatctcgatcgcgtcgccggagaagattctgtcgtggtcctacggcgagatcaag
aagccggaaaccatcaattaccgcaccttcaagcccgagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggattacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgagaagtgctcggtcgaagtgacgctgtcgcgcgtccgacgc
gagcgcatgggccacatcgagctggcggcaccggtcgcccacatctggttcctgaagtcc
ttgccgtcgcggatcgggcagttgctcgacatgacgctgaaggacctcgagcggattctg
tacttcgaatactacgtcgtgctggagccgggcctgaccgacctcaaggagcgtcagctg
ctgtcggaggaggagtacctccgcgcccaggatcagtacggccaggacagcttcaccgcc
atgatcggcgccgaagcgatccgcgaattgctgaagggactcgagctcgagaagatcgat
gcgcagctgcgcgtcgagatggccgagaccgactccgacatcaagcacaagaagctcgcc
aagcggctgaagatcgtcgaggcgttccgcttctccggcaacaagccggagtggatgatc
ctgaccgtggtgccggtgattccgccggacctgcggccgctggtgccgctcgacggcggc
cggttcgcgacctcggatctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgg
ttgaagcggctgatggagctgcgcgcgccggacatcatcatccgcaacgaaaagcggatg
ctgcaggaagccgtcgacgcgttgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgttgaagtcgctcgccgacatgctgaagggcaagcagggtcggttc
cgtcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtcgtcggc
cccgagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgacgccaagggtctgtcgaccacggtgaagcaggcgaag
aagctcgtcgaaaaggagcgtcccgaggtctgggacatcctcgacgaagtcattcgcgag
catccggtgctgctgaaccgcgccccgacgctgcatcgcctcggcatccaggcgttcgag
ccggtgctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaac
gccgatttcgacggcgaccagatggccgtgcacgtcccgctgtcgctcgaagcgcagctc
gaagcgcgcgtgctgatgatgtcgaccaacaacatcctgcatccggcgaacggccagccg
atcatcgtgccgtcgcaggacatcgtgctcggcctgtactacctgtcgatcctgcgggaa
gggctgccgggcgagggcaaggtgttcggcgacctcgccgagctggagcacgcgctgttc
tccaaggtcatccacctgcacaccaagatcaaatatcgctgggactcgctcgacgacgag
ggcaagccgtaccagcggctgatcgagaccaccgccggccgcatcctgctcggccaggtt
ctgccgaaatcggtgaagctgccgttcgaggtcatcaacaagctgatgaccaagcgcgag
atctccagcgtgatcgatcaggtctatcgccactgcggccagaaggagacggtgatcttc
tgcgaccgcatcatggcgctgggcttcttcaacgcgttcaaggcgggcatctcgttcggc
aaggacgacatggtcgtgccggcctcgaagtggaagatcgtcgacaccacgcgtacgctg
gcgaaggatttcgagcagcagtacaacgacggtctgatcacccacggcgagaagtacaac
aaggtggtcgacgcctggtcgaaggccaccgaggaaatcgccaaggagatgatgaaggag
atctccgcggtccggaagaacgcatccggcgcggagacccaggtcaactcgatctacatg
atggcccattccggcgcgcgtggttcgcccgcccagatgcgtcagctcgccggcatgcgc
ggcctgatggccaagccgtcgggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctctcggttctcgagtacttcaactcgacccacggcgcccgtaagggcctcgcg
gacaccgcgttgaagaccgcgaactccggctacctgacccgccgtctggtcgacgtggcg
caggactgcatcatcacccaggatgattgcggcacctcgctcggcatcaagatgcgggcg
atcatcgacgccggcaccgtggtggcgtcgctcggctcgcgcatcctcggccgcaccgcg
ggcgaagacgtgcgcgatccgcagaccaacgaggtgatcgtcaagaagggccagctgatg
gaggagcgcgacgtcgaggcgatccaccaggccggcgtccaggaagtgaagatccgctcg
gcgctgacctgcgaactggtcaacggcatctgcggcaagtgctacgggcgcgatctcgcc
cgcggcaccccggtcaaccacggcgaggcggtcggtgtcatcgccgcgcagtcgatcggc
gaacccggcacgcagctgacgatgcgtaccttccacatcggcggcgcggcgcagatcaac
gagcagtcggtgatcgagtcgaacttcgagggtaaggtcgtcatcaagaacaaggcgatc
gcccgcaacggcgagaaccacagcgtcgcgatggttcgcaacatggtggttgcgatcgtc
gatccggacggcaccgaacgggcgacccaccgcatccagtacggcgcgcgcatgcacgtc
gacgagggcgacacggtgaagcgcggccagcgcatcgccgagtgggatccgtacagccgc
ccggtgctgaccgaggtcgagggcacgatcgatttcgaggatctggtcgaagaccagtcg
atctcggaaacgctcgacgaatccaccggcatcgccaagcgtatcgtcatcgactggcgc
tcgacccgcggcggcgccgatctgcgcccggcgatcgtggtcaagggcaaggacggcaag
gtgctgaagctggcgcgcggcggtgacgcccgctacatgctgtcggtcgacgccattctg
tcggtcgacgtcggcgccaaggtgaagccgggcgacatcctcgcgcgtatctcgaccgag
agcgcgaagacccgcgacatcaccggcggtctgccgcgcgtcgccgaactgttcgaggcc
cgcaagccgaaggacgcggcgatcatcgcggaaatcgccggcaccatccggttcggccgc
gactacaagaacaagcgtcggatctcgatcgaaccgatggacagcgaagaagaggcgcgc
gagtacctgatcccgaagggcaagcacatccaccttcaggacggcgacatcgtggaaaag
ggcgacttcatcgtcgaaggcaacccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgctgcctatctggtcaacgaaatccaggaggtctaccggctccagggcgtg
ttgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
accgaccagggcgagaccgacatgatctcgggcgaacagatcgacaagatcgagttcgac
cagctcaacgccaaggcgcgcgacgagggcaagaagatcgccacgggaacgccggttctg
ctcggcatcaccaaggcgagcctgcagacccgctcgttcttctcggcggcgtcgttccag
gagaccacccgcgtgctcaccgaagccgccgtcaacggcaaggtggacccgctggaaggc
ctcaaggaaaacgtcatcgtcggccggctgatcccggccggcaccggcgcctcgatggcc
aagctccgcgaagtcgcgatgaagcgggatcgcatgatcctcgacgaacgcgagaagcag
gcgaccatcgtgccgcccgcggccccggaagccgagccgctggcgctgccgccggtcgaa
taa
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