Rhodopseudomonas palustris HaA2: RPB_3009
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Entry
RPB_3009 CDS
T00321
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rpb
Rhodopseudomonas palustris HaA2
Pathway
rpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPB_3009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpb03019
]
RPB_3009
03009 Ribosome biogenesis [BR:
rpb03009
]
RPB_3009
Enzymes [BR:
rpb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RPB_3009
Messenger RNA biogenesis [BR:
rpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RPB_3009
Ribosome biogenesis [BR:
rpb03009
]
Prokaryotic type
rRNA processing factors
RPB_3009
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABD07711
UniProt:
Q2IVP9
LinkDB
All DBs
Position
3429731..3432913
Genome browser
AA seq
1060 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEENEQRSTRRRSRHRSHRR
RGSGERVTSEIVEASAGAVAEPHDQFSDLADSDPADNGHAHADHERPMHDIPADDAGDVT
QASADNAEGHDGHHDAERQGYHAASAEYLDETAVAPSIADGEQPTLPDFGATPHAQTLSQ
DVEENSGHAEDAPFPIAEGAEQEHGDDAGDELNDADGDADLEDAARSDTEADDEDEDEDE
DDEAEEDIVESVGGDDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAAL
TTYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASR
TKPEIKRDFEYLIRMWETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEA
GYQEARDFMHMLMPSNVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQT
EALVSIDVNSGRSTREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNN
RAVERKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSV
SSVALQLLRGLEEILMKGATHNLIVRTRADVALYVLNQKRGHLRDLETGFRVTLSVVSDP
TVTGQQSFVIDRGEQVHTLESAKALLAAQVAAYPVQAEEPFEDDEGYEFEAEIETDETVG
LADEHASDSGEGEGEGDARKRKRRRRRRSRTGEAREAGAPREDGDAALVPEVLEAVSEDD
SEDGDDSADGAEGDGDARADQANGERRPRRRGRRGGRRRRGAAEGGLEEGASGSIVDDIG
ELETSEAAEAAADMDGGGSDGRLLGKRHEPDIDDDEMAEPVTATLSPVASEPEERAEPVQ
AQQSEPVASAPAQDAAPSAQAQDDAAAERAAARRRSTVREKVNFGSSEPKVEASTPLAIE
PAAQQPEPAPAIPEPQAAAEPAPEPSRRAGWWSRRFGGGN
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgctgatcgacgccacccacccggaagagacccgggtggtcgtggtc
cgcggcaaccgcgtcgaagagtttgatttcgagaccgcacagcgcaaacaactgcgtggc
aacatctacctcgccaaagtgacacgggtcgaaccgtcgttgcaggccgccttcatcgaa
tacggcggcaaccggcacggattcctcgctttcagcgaaatccatcccgactactaccag
atccccgtcgccgatcgtcaggccctgatcgaggccgacgagcgggcgcatcgcgaggcc
gaggaagaaaacgagcagcgctcgacccgccgccggtcgaggcaccgcagccatcgccgc
cgcggcagtggcgaacgggtcaccagcgagatcgtcgaggcttccgccggcgccgtggcc
gagccgcacgatcaattcagcgatcttgccgacagcgatcctgccgacaatggacacgcg
cacgccgaccacgaacggccgatgcacgacattcctgcggatgacgccggcgatgtgacg
caggcctcggcggacaatgccgaaggccacgacggtcatcacgacgccgagcgccaggga
taccatgcggcttcggctgagtatctcgacgagacggcggtcgcgccgagcatcgccgac
ggcgagcagcccaccctgcccgacttcggcgccacgccgcacgcccagaccctctcccag
gacgttgaagagaatagcggtcacgccgaagatgcgccgttcccgatcgccgaaggcgct
gagcaagaacatggcgatgacgccggcgacgaattgaacgacgcggatggcgacgcggac
ctggaggacgctgcccggtccgacaccgaagcagacgacgaggatgaagacgaggacgag
gacgacgaggccgaggaagacatcgtcgaatccgtcggcggcgacgatgtgctggaagaa
gttcccgaacgcgccttccggccgcgccggcagtacaaaatccaggaagtcatcaagcgc
cgtcaggtgatgctggtgcaggtggtcaaggaagagcgcggcaacaagggcgcggcgctg
acgacctacctgtcgctcgccggccgttacgccgttctgatgccgaacaccgcgcgcggc
ggcggcatcagccgcaagatcacgtcggcgcaggatcgctcccgcctcaaggaagtggtt
caggatctcgacgtgccggaaggcatgggcatcatcctgcgcaccgccggcgcctcgcgc
accaagccggagatcaagcgcgacttcgaatatctgatccggatgtgggagacggtccgc
gacgtcacgctgaagtcgcaggcgccgacgctcgtctacgaggaaggctcgctgatcaag
cgctcgctacgcgatctctacaacaaggagatcgacgaaatccaggtcgcgggcgaagcc
ggctaccaggaagcgcgcgacttcatgcacatgctgatgccgtccaacgttcgcgcggtg
aagctgtatcgcgacgggcaacctctgttctcgcgaatgggagtcgagagccagctcgac
gcgatgttctcgccgaccgtgcagttgcggtccggcggctacatcgtgatcaaccagacc
gaggcgttggtctcgatcgacgtcaactccggtcgctcgacccgcgagcaccatatcgag
gacaccgcgctcaagaccaacctcgaggcctcggaggaagtcgcgcggcagctgcgcctg
cgcgacctcgccggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaat
cgcgctgtcgagcgcaagctcagcgattgcctgcggcaggatcgcgcccgcatccaggtc
ggtcggatctcgcatttcggcctgctcgaaatgtcgcgccagcgcatccgcgccagcgtg
ctggaaagctcgaccgagccctgcccgcattgcggcggctccggccacgtgcggtcggtc
tcgtcggtggcgctgcaattgctgcgcggtctcgaagagatcctgatgaagggcgcgacc
cataatctgatcgtgcgcacccgcgccgatgtcgccctctatgtcctcaatcagaagcgc
gggcacctgcgcgatctcgaaaccggcttcagggtgacgctgtcggtcgtgtcggatccg
accgtgaccggacagcagtcgttcgtgatcgatcgcggcgagcaggttcacacgttggaa
tccgccaaggcgctgctcgcggcgcaggtcgcggcctatccggtccaggccgaagagcct
tttgaggacgacgagggttacgagttcgaggccgagatcgaaaccgacgagaccgtcggc
ctggccgatgagcacgccagcgacagtggcgaaggcgaaggagaaggcgacgcccgcaag
cgcaagcgccgccgccgccgccgctcgcgcaccggcgaggcccgtgaagcgggcgcgccg
cgcgaggacggcgatgctgcgctcgttcccgaggttttggaagccgtttccgaagacgac
agcgaagacggcgacgacagcgccgacggcgctgaaggggacggtgacgcgcgggccgat
caggcgaatggcgagcgtcgtccgcgtcgccgtggccgccgcggcggtcgccgccggcgt
ggcgctgccgagggaggcctcgaagaaggcgcctccggctcgatcgtcgacgacatcgga
gagttggagacctcggaggccgccgaggcggccgccgatatggacggcggtggatcggac
ggacgcttgctcggcaagcggcacgagccggacatcgatgacgatgagatggcagagccg
gtcacggctacgctttcccccgttgccagcgagccggaagaacgcgcagagccggtgcag
gcgcagcagagcgagccggtcgcctcggcccccgcccaagacgccgctccgtcggcgcag
gcccaggacgacgccgcagccgagcgcgccgccgcacgccgccggtcgacggtgcgcgaa
aaggtgaatttcgggtcctcggaaccgaaggtggaggcgtcgacgccgctggcgatcgag
ccggcagcgcagcagcccgaaccggcaccggccattccggagccacaggccgctgccgag
ccggctcccgaaccttcccgtcgcgccggatggtggtcgcgccgcttcggcggcggcaac
tga
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