Rhodopseudomonas palustris HaA2: RPB_4146
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Entry
RPB_4146 CDS
T00321
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
rpb
Rhodopseudomonas palustris HaA2
Pathway
rpb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPB_4146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpb03400
]
RPB_4146
DNA repair and recombination proteins [BR:
rpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPB_4146
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RPB_4146
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
SWI2_SNF2
AAA_22
Microtub_bd
DUF87
Motif
Other DBs
NCBI-ProteinID:
ABD08838
UniProt:
Q2ISH2
LinkDB
All DBs
Position
4721591..4724644
Genome browser
AA seq
1017 aa
AA seq
DB search
MRMKPRSRTLYSARAPPHIAGMAKTPDQSAKPTSKAPTSKAPKSKPPNSKAHRPDVQPIG
PALAELLNPAINRGDAGMGSGTGLQPPPDNSRDRRTGGEAAVHRGRASTAKTVGDEAAPR
PTPLQPAPQPPGARRGGFDEAPQATYGTAATIPTLDPELARQLGLPTEEDDAAAMARPPR
NKMEALGVQATAEALEALIRDGRPEFKGDDGNVKLWVPHRPPRPEKSEGGVRFVIKSDYE
PKGDQPTAIKELVEGIARNDRTQVLLGVTGSGKTYTMAKVIEATQRPAIILAPNKTLAAQ
LYGEFKSFFPDNAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRHSATRALLE
RDDVIIVASVSCIYGIGSVETYTAMTFALKKGERIDQRALIADLVALQYKRTQADFTRGT
FRVRGDVIDIFPAHYEDRAWRVKMFGDEVEAIEEFDPLTGHKQDELEFVKIYANSHYVTP
RPTLIQAIKSIKSELKWRLDQLHAQGRLLEAQRLEQRTTFDIEMMEATGSCAGIENYSRY
LTGRRPGEPPPTLFEYVPDNALVFADESHVTVPQIGGMFKGDFRRKATLAEYGFRLPSCM
DNRPLRFEEWDMMRPQSVAVSATPAAWELNESGGVFVEQVIRPTGLIDPPVDIRPARTQV
DDLVGEVRATANAGYRSLITVLTKRMAEDLTEFLHEQGIRVRYMHSDIDTIERIEIIRDL
RLGAFDALVGINLLREGLDIPECALVAILDADKEGFLRSETSLIQTIGRAARNVDGKVIL
YADHVTGSMQRAMDETGRRREKQIEYNTAHGITPESIKKSIGDILGSVYERDHVLVEIGD
GKGSGFTDDAAVIGHNFGAVLADLETRMREAAADLNFEEAARLRDEVKRLRATELAVSDD
PTVKQRGVAAKAGSYKGDKQFGASANLPKLSTERGGNNTPRSKVHKPDLDEMGIAGWHEV
KKVQRAKPRKPTLDEMGPGTESKIFQPKNSRESGPEFGPAPRSSGGAPGHRGGWKKR
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgcggatgaaaccgcggtcgcgaaccctttattcggcccgtgctccgccccatattgcc
ggcatggcgaagacccccgaccaatccgcgaagcccacatcgaaagcgccgacatccaag
gcgccgaaatccaagccgccgaactccaaggcgcaccgccccgacgtgcaaccgatcggg
ccggcgctggccgagttgctcaatcccgcgatcaatcgcggagatgccggcatgggctcg
ggcaccggcctgcagccgccgccggacaattcgcgcgaccgccgcaccggcggcgaggcc
gcggtgcatcgcggccgggcctcgacggcgaaaacagtcggcgacgaagccgcgccgcgg
ccgacgccattgcaacccgcgccgcagccgccgggcgcgcgtcgcggcggcttcgacgaa
gccccgcaagcgacctacggcaccgccgccaccatcccgacgctggatccggaactggcg
cggcagctcgggctgccgaccgaggaggacgacgcggccgcgatggcgcggccgccgcgc
aacaagatggaagcactcggcgtgcaggccaccgccgaggcgctggaggcgctgatccgc
gacggccggccggaattcaagggcgacgacggcaacgtcaagctgtgggtgccgcaccgg
ccgccgcggccggagaaatccgaaggcggcgtgcgcttcgtcatcaagtcggactacgag
ccgaagggcgaccagccgaccgccatcaaggaactggtcgaaggcatcgcgcgcaacgat
cggacccaggtgctgctcggcgtcaccggctcgggcaagacctacaccatggccaaggtg
atcgaggcgacgcagcgcccggcgatcatcctggcgccgaacaagacgctggcggcgcag
ctctacggcgagttcaagagcttcttccccgacaacgccgtcgagtacttcgtctcgtat
tacgactactaccagccggaagcctacgtcccgcgcaccgacacctatatcgagaaggac
tcctcgatcaacgagcagatcgaccggatgcggcattcggcgacccgtgcgctgctggag
cgcgacgacgtcatcatcgtggcgtcggtgtcgtgcatctacggtatcggctcggtcgag
acctacacggcgatgaccttcgcgctgaagaagggcgagcggatcgaccagcgcgcgctg
atcgccgatctggtcgcgctgcaatacaagcggacgcaggccgacttcacccgcggcacg
tttcgcgtgcgcggtgatgtgatcgacattttcccggcgcactacgaggatcgcgcctgg
cgggtgaagatgttcggcgacgaggtcgaagccatcgaggagttcgacccgctcaccggc
cacaagcaggacgagctggaattcgtcaagatctacgccaattcgcactatgtgacgccg
cggccgacgctgatccaggcgatcaagtcgatcaagtccgaactgaaatggcggctcgac
caattgcacgcgcagggacgcctcttggaggcgcagcggctggagcagcgcaccaccttc
gacatcgagatgatggaagcgaccggcagctgcgccggcatcgagaactactcacgctac
ctcaccggccgccgccccggcgagccgccgccgacgctgttcgaatacgtgcccgacaac
gcgctggtgttcgccgacgagagccacgtcaccgtgccgcagatcggcggcatgttcaaa
ggcgacttccggcgcaaggcgacgctggccgaatacggcttccggctgccgtcctgcatg
gacaaccggccgctgcgcttcgaggaatgggacatgatgcggccgcagagcgtggccgtg
tcggcgacgccggcggcgtgggagctgaacgagagcggcggcgtgttcgtcgaacaagtc
atccgcccgaccgggctgatcgacccgccggtcgacatccgcccggcgcgcacgcaagtg
gacgatctcgtcggcgaagtccgcgccaccgccaatgccggctatcgctcgctgatcacc
gtgctgaccaagcggatggccgaggacctcaccgagttcctgcacgagcagggcattcgt
gtgcgctacatgcattcggacatcgacaccatcgagcgcatcgagatcatccgcgacctg
cggctcggcgcgttcgacgcgctggtcggcatcaatctgctgcgcgaaggcctcgacatt
ccggaatgcgcgctggtggcgatcctcgacgcggacaaagagggattcctgcgcagcgag
acctcgctgatccagaccatcggccgcgccgcgcgcaacgtcgacggcaaggtgatcctc
tacgccgatcacgtcaccggttcgatgcagcgcgcgatggacgagaccggccgccgccgc
gagaagcagatcgaatacaacaccgcgcacggcatcacgccggagagcatcaagaagtcg
atcggcgacatcctgggctcggtgtacgagcgcgaccacgtgctggtcgagatcggcgat
ggcaagggctcgggcttcaccgacgacgcggcggtgatcgggcacaatttcggcgcggtg
ctggccgacctcgaaacgcggatgcgcgaggccgcggccgacctgaacttcgaggaagcc
gcgcgactgcgcgacgaagtcaaacgcctgcgcgcgaccgaactggcggtgagcgacgat
cccacggtgaagcagcgcggcgtcgcggcgaaggccggcagctacaagggcgacaaacag
ttcggcgcttcggccaatctgccgaaactctcgaccgaacgcggcggcaacaacaccccg
cgcagcaaggtgcacaagcccgacctcgacgaaatgggcatcgccggctggcacgaagtc
aagaaagtgcaacgcgccaagccgcgcaagccgacgctcgacgagatgggcccggggacg
gagagcaagatcttccagccgaagaattcacgcgagtccggcccggaattcggcccggcg
ccgcggagcagtggcggcgcgccggggcatcggggcgggtggaagaagaggtag
DBGET
integrated database retrieval system
