Rhodopseudomonas palustris HaA2: RPB_4701
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Entry
RPB_4701 CDS
T00321
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rpb
Rhodopseudomonas palustris HaA2
Pathway
rpb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPB_4701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpb03019
]
RPB_4701
03400 DNA repair and recombination proteins [BR:
rpb03400
]
RPB_4701
Enzymes [BR:
rpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPB_4701
Messenger RNA biogenesis [BR:
rpb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPB_4701
DNA repair and recombination proteins [BR:
rpb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RPB_4701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
HHH
Motif
Other DBs
NCBI-ProteinID:
ABD09384
UniProt:
Q2IQX6
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All DBs
Position
5321057..5322913
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AA seq
618 aa
AA seq
DB search
MTLSASRHASDDLDARALSTLNHVFGLPGFRGHQEAIIRHVAHGGDCLVLMPTGGGKSLC
YQLPALLRDGCGIVVSPLIALMRDQVAGLLEAGVRAAALNSSLSYAEADAIERQLLAGEL
DLLYVAPERLLTPRCLAMLARAKIALFAIDEAHCVSQWGHDFRPEYVGLSAIAEKFPNVP
RIALTATADALTRREISERLGLTDAPCFVSSFDRPNIRYAIVDKQNAPAQLKAFIADKHM
GHSGVVYCLSRAKVEDIADTLCKAGIDALPYHAGLPAEIRARNQDRFINEDGVVIVATIA
FGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSDAWMAYGLSDIVQQRRMIDES
SGSDAFKRVSMGKLDALVGLCESTACRRTRLLGYFGETALEPQCGNCDNCLSPPKVIDGT
VAAQKLLSCAYRTGQRFGAQHLIDVLLGRLTERVGQFGHDKLSVFGIGGEFNEKQWRAVI
RQLVSLGHLAPDSEAFGALKLTESSRAVLKGDAQVMLREQTGGRPPRAKSRRGDLVGGAP
RESTGDPDLFAALKAWRSEVAKSRGVPAYVVLHDATMDGIAAVRPRSLDELRGIPGIGDK
KLEHYGQELLALVNASGS
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgaccctctccgcctcgcgccacgcctccgacgacctcgatgcccgcgcgctgtcgacg
ctgaatcacgtgttcggcctgcccggctttcgcggccatcaggaagcgatcatccgccat
gtcgcgcatggcggcgattgtctggtgctgatgccgaccgggggcggcaagtcgctgtgc
taccagttgcccgccctgttgagagacggctgcggcatcgtggtgtcgccgctgatcgcg
ctgatgcgcgaccaggtggcggggctgctggaggccggcgtgcgcgccgcggcgctgaat
tccagcctaagctacgccgaggccgacgcgatcgagcggcagctgctcgccggcgaactc
gaccttttatacgtcgcccccgaacgcctgctgacaccgcgttgcctggcgatgctggcg
cgggcgaaaatcgcgctgttcgcgatcgacgaggcgcattgcgtgtcgcaatggggccac
gacttccggccggaatatgtcggcctctccgccatcgccgagaaattccccaacgtgccg
cggatcgccctgaccgcgaccgccgacgcactgacgcggcgcgagatcagcgagcggctc
ggcctcaccgacgcgccctgcttcgtgtcgagcttcgaccggccgaacatccgctacgcc
atcgtcgacaagcagaatgcgccggcgcagctcaaggcgttcatcgccgacaagcatatg
ggccattccggcgtggtgtattgcctgtcgcgcgccaaggtcgaggacatcgccgacacg
ctgtgcaaggccggcatcgacgcgctgccctatcacgccggtctgccggcggagatccgc
gcgcgcaatcaggaccgcttcatcaacgaggacggcgtggtgatcgtcgccaccatcgcg
ttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcgcatctcgacctgcccaag
agcatcgaggcctattatcaggagaccggccgcgccggccgcgacggcaagccgtcggat
gcctggatggcctacggcctttccgacatcgtgcagcagcggcggatgatcgacgaatcc
tccggctccgacgccttcaagcgggtgtcgatgggcaagctcgatgcgctggtcggcctg
tgtgaatccaccgcctgccgccgcacccggctgctcggctatttcggcgagacggcgctc
gagccgcagtgcggcaattgcgataattgtctgtcgccgcccaaggtgatcgacggcacc
gtggcggcgcagaagctgctgtcctgcgcctatcgcaccgggcagcggttcggcgcccag
catctgatcgacgtgctgctcggccgcctgaccgagcgcgtcggccagttcggccacgac
aagctctcggtgttcggcatcggcggcgaattcaacgagaagcaatggcgggcggtgatc
cggcaattggtgtcgctcgggcacctcgcgccggacagcgaggcgttcggcgcgctgaaa
ctcaccgagagttcgcgcgcggtgctgaagggcgacgcgcaggtgatgctgcgcgagcag
accggcggccggccgccgcgggcgaaatcccgccgcggcgatctggtcggcggcgcgccg
cgcgaatcgaccggcgatccggatctgttcgcggcgctgaaggcgtggcgctccgaggtg
gcgaagagccgcggcgtgccggcctatgtggtgctgcacgacgccaccatggacggtatc
gccgcagtgcgcccacgctcgctcgacgaactgcgcggcattcccgggatcggcgacaag
aagctggagcattatggccaggaattgctggccctggtaaatgcctcaggcagctga
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