Rhodopseudomonas palustris BisB18: RPC_0377
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Entry
RPC_0377 CDS
T00336
Name
(GenBank) Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rpc
Rhodopseudomonas palustris BisB18
Pathway
rpc03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPC_0377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpc03400
]
RPC_0377
Enzymes [BR:
rpc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RPC_0377
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RPC_0377
DNA repair and recombination proteins [BR:
rpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RPC_0377
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Fapy_DNA_glyco_C
HIP1R
Motif
Other DBs
NCBI-ProteinID:
ABD85952
UniProt:
Q21CD4
LinkDB
All DBs
Position
complement(403844..404725)
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AA seq
293 aa
AA seq
DB search
MPELPEVETVRRGLEPAMAGARIDGFEARRADLRFALQPDLATRLIGQTVKGLGRRAKYL
LAELSSGDVLLMHLGMSGSFRVLQGEASGAPGAFHHPRNDDRAHDHVVFRMSNGAVVVFN
DPRRFGYMKILAPGEIADEPFLKGLGPEPLGNSFDAAMLASACAGRKTSLKAALLDQRVV
AGLGNIYVCEALFGAHLSPKRLAATLATRTGAPTERAERLVEAIRAVLHAAIKAGGSSLR
DHRQTSGELGYFQHSFAVYDREGEPCRSKGCDGVVKRFVQNGRSTFWCPKCQK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgcccgaagtcgaaaccgtccggcgcgggctcgagccggccatggcgggc
gcgcggatcgacggcttcgaggcgcggcgcgccgatctgcgctttgcgctgcagccggat
ctggccacgcggctgatcggccagaccgtcaaggggctcggccggcgggcgaaatatctt
ttggcggaactgtcgagcggcgacgtgctgttgatgcatctcgggatgtcgggctcgttc
cgggtgctgcagggcgaggcgtccggcgcgccgggggcgtttcaccatccgcgcaacgac
gaccgcgcccatgatcacgtggtgttccggatgtcgaacggcgcggtggtggtgttcaac
gatccgcgccgcttcggctatatgaaaatcctggcgccgggcgagatcgccgacgagccg
tttctcaaaggtttgggcccggagccgctcggcaattcgttcgacgcggcgatgctggcg
tcggcctgcgccggccgcaaaaccagcctcaaggcggcgctgttggaccagcgcgtggtc
gcggggctcggcaacatctatgtctgcgaggcgctgttcggcgcgcatctgtcgccgaaa
cgactcgcggcgacgctggcgacccgaacgggcgcgccgaccgagcgcgccgagcggctg
gtcgaggcgatccgcgcggtgctgcacgcggcgatcaaggccggaggctcgtcgttgcgc
gaccaccgccagacctcgggcgaactcggctatttccagcattccttcgcggtctacgac
cgcgagggcgaaccctgccgcagcaaaggctgcgacggggtggtgaagcgcttcgtacag
aacggccgctccaccttctggtgcccgaagtgccagaagtga
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