Rhodopseudomonas palustris BisB18: RPC_2239
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Entry
RPC_2239 CDS
T00336
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rpc
Rhodopseudomonas palustris BisB18
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpc03032
]
RPC_2239
03400 DNA repair and recombination proteins [BR:
rpc03400
]
RPC_2239
Enzymes [BR:
rpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RPC_2239
DNA replication proteins [BR:
rpc03032
]
Prokaryotic type
DNA Topoisomerases
RPC_2239
DNA repair and recombination proteins [BR:
rpc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RPC_2239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
zf-C4_Topoisom
Toprim_4
Milton
Motif
Other DBs
NCBI-ProteinID:
ABD87793
UniProt:
Q215Z3
LinkDB
All DBs
Position
complement(2443522..2446290)
Genome browser
AA seq
922 aa
AA seq
DB search
MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFQMIWEIDPKAAG
RLNDIAKALKGADKLILATDPDREGEAISWHVLEVLKEKRAIKDHKIERVVFNAITKQAV
TDAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ELEIEKFVPREYWSLVATLTTPRGEMFEARLTGADGKKIQRLDIGTGAEAEDFKQAIEAA
LFNVASVEAKPARRNPYAPFTTSTLQQEASRKLGFAPAHTMRIAQRLYEGIDIGGETTGL
ITYMRTDGVQIDSSAITQARQVIGEDYGKQYVPEAPRQYTAKAKNAQEAHEAIRPTDLSR
RPASLRARLDHDQIRLYELIWIRTIASQMESAELERTTVEIAAKAGSRVLELRATGQVVK
FDGFLAVYQEGRDDDGDDEDSRRLPAMSQGEALARKDLAVTQHFTEPPPRFSEASLVKRM
EELGIGRPSTYASILQVLKDRGYVKLDKKRLHAEDKGRVVVAFLENFFARYVEYDFTAAL
EENLDRISNNEISWQQVLRDFWTDFIGAVNDIKDLRVAQVLDALDDMLGSHIYAPRDDGG
DPRQCPSCGTGKLNLKAGKFGAFVGCSNYPECRYTRPLAADGGGDGDRILGKDPVSGLEV
AVKAGRFGPYIQLGDAKDYAEGEKPKRAGIPKNSSPGDMELELALKLLSLPREVGKHPET
GEPIKAGIGRFGPYVQHEKTYASLEAGDEVFDIGLNRAVTLIAEKILKGPSKRRFGSDPG
KPLGEHPSLGTVAVKSGRYGAYVTAGGVNATIPSDKTQESITLPEAIALIDERAAKGGGK
PKKAAKKAPAKKAAKSDTDAAAETKKPAKKAAAKKSVAKPKADGVAVSAARAPAKAKSST
KTAAAKKPAKPAAKKSAGKANG
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgtcattgtcgagtcgcctgcgaaggccaagacgatcaacaaatatctgggc
agttcctacgaggttctggcctcgttcggccatgtccgcgaccttccggcgaagaacggc
tcggtcgatcccgacgccaatttccagatgatctgggaaatcgatcccaaggccgccggc
cggctcaacgacatcgccaaggcgctgaagggcgccgacaagctgatcctcgcaaccgac
cctgatcgcgagggggaagcgatctcctggcacgtgctggaggtgttgaaagagaagcgc
gcgatcaaggatcacaagatcgaacgcgtggtgttcaacgccatcaccaagcaggcggtc
accgatgcgatgaagaacccgcgccagatcgacggcgcgctggtcgacgcctatatggcg
cgccgcgcgctggactatctggtcggctttacactctctcccgtattgtggcgcaaactg
cccggcgcccgctccgccggccgcgtccaatcggtggcgctgcggctggtctgcgaccgc
gagctcgagatcgagaaattcgtgccgcgggaatactggtcgctggtggcgaccctgacc
acgccgcgcggcgagatgttcgaggcccggctcaccggcgccgatggcaagaagatccag
cggctcgacatcggcaccggcgccgaggccgaggatttcaagcaggcgatcgaagcggcg
ctgttcaatgtcgccagcgtcgaagccaagccggcgcggcgcaacccctacgcgccgttc
accacctcgacgctgcagcaggaggccagccgcaagctcggcttcgccccggcgcacacc
atgcggatcgcgcagcggttgtatgaaggcatcgacatcggcggcgagaccaccggtctc
attacttatatgcgtaccgacggcgtgcagattgattcctccgccatcacccaggcgcgc
caggtgatcggcgaggactacggcaagcaatacgttccggaggcgccgcggcaatacacc
gccaaggccaagaacgcccaggaagcccatgaagcgatccggccgaccgacctcagccgc
cgccccgccagcttgcgcgcccggctcgaccacgatcagatccggctctacgagctgatc
tggatccgcaccatcgccagccagatggaatccgccgaattggagcgcaccaccgtcgag
atcgccgccaaggcgggctcgcgggtgctggaactgcgcgccaccggccaggtggtgaag
ttcgacggcttcctggcggtgtatcaggaaggccgcgacgacgacggtgacgacgaggat
tcccgccgactgccggcaatgagccaaggcgaagccttggctcgcaaggacctcgccgtc
acccagcatttcaccgagccgccgccgcgcttctccgaagcctcgctggtcaagcggatg
gaagagctcggcatcggccggccctcgacctacgcctcgatcctgcaggtgttgaaggac
cgcggctacgtcaagctcgacaagaagcggctgcacgccgaggacaagggccgcgtcgtg
gtcgcgttcctggagaacttcttcgcccgctacgtcgaatacgacttcaccgcggcgctg
gaggaaaacctcgaccggatttccaacaacgaaatctcctggcaacaggtgctgcgcgat
ttctggaccgacttcatcggcgcggtcaacgacatcaaggatctgcgcgtcgcgcaggtg
ctggacgcgctcgacgacatgctcggctcgcacatctatgcgccacgcgacgacggcggc
gatccgcggcaatgcccgagctgcggcaccggcaagctcaacctcaaggccggcaagttc
ggcgccttcgtcggctgcagcaactatccggaatgccgctacacccgcccgttggcggct
gacggcggcggcgacggcgaccgcattctcggcaaggacccggtgtccggcctcgaagtc
gcggtcaaggccggccggttcggtccctatatccagctcggtgacgccaaggactacgcc
gagggcgagaagccgaaacgcgccggcattccgaaaaactcctcgcccggcgacatggag
ctcgagctcgcgctgaagctgttgtcgctgccgcgcgaagtcggcaaacatccggagacc
ggcgagccgatcaaggccggcatcggccgcttcggtccctatgtgcagcatgagaagacc
tatgccagcctggaagctggcgacgaggtgttcgacatcgggctgaaccgcgcggtgacg
ctgatcgccgagaagatcctcaaaggcccgagcaagcgacggtttggttcggaccccggc
aaaccgctcggcgagcatccctcgctcggcaccgtggcggtgaagagcggacgttacggc
gcttacgtcaccgccggcggcgtcaacgccacgattccgagcgacaaaactcaagagagc
atcaccctgcccgaggccatcgcgctgatcgacgagcgcgcggcgaagggcggcggcaag
ccgaagaaagccgcgaagaaagcgccggccaagaaggccgcgaagtccgataccgacgca
gcggcagagacgaaaaaacccgcgaagaaagccgcggcgaagaagtcggtcgccaagccg
aaggccgacggcgtcgccgtaagtgccgcgcgcgcgccggcgaaagccaaatcctcgacc
aagaccgccgcagccaagaagcctgcaaagccggcggcgaaaaaatccgcgggcaaagcc
aacggctga
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