Rhodopseudomonas palustris BisB18: RPC_2813
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Entry
RPC_2813 CDS
T00336
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rpc
Rhodopseudomonas palustris BisB18
Pathway
rpc03410
Base excision repair
rpc03430
Mismatch repair
rpc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPC_2813
03430 Mismatch repair
RPC_2813
03440 Homologous recombination
RPC_2813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpc03400
]
RPC_2813
DNA repair and recombination proteins [BR:
rpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RPC_2813
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RPC_2813
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPC_2813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABD88361
UniProt:
Q213S5
LinkDB
All DBs
Position
complement(3053695..3055536)
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AA seq
613 aa
AA seq
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MTPPATAIPIEQPPAFLGVARSATGRVWRDRLDPRGAARALAIAQRYQLPEMLARVLAGR
NVEIDAVEDFLDPTIRRLLPDPYSVTQMEAAAKRLADAVLGAETVAIFGDYDVDGATSAA
LLAWHLRHCGLDPLIHIPDRIFEGYGPNVDAVRMLASRGATLLITVDCGTTSLEPLAEAK
RLGMSVVVIDHHQCGDELPVVDALVNPNRPDDLSGLGHLAAVGLVFVTLVALNRELRARG
FWTLERPQPELLNMLHHVALGTVADVAPLTGLNRAFVAKGLIAMRRRDHVGHTALMDIAR
LNGPPDAFHLGFLLGPRINAGGRIGRADLGVRLLLESDISEAAKIAAELDRLNAERRVIE
QMAEAQAEAEALAALGFEDKGSVIVTASEGWHPGVVGLVASRLKEKFSRPAFAIALEPGG
IGTGSGRSIPGVDLGKAVRQAVSDGLLLKGGGHAMAAGVTLRKEKLAEFRAYIEAALAAD
VARSRHANELFIDGAVSARAVTPDLVATLNRAGPFGSGNPEPVLALPSHQLVYADEVGQA
HLRLRFKSGDGAIVNGIAFRSVGQKLGNALQENRGQPLHVAGCLTVDRWQGNERVQLRVT
DVAVPDPGPAVIR
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctcccgccaccgccattccgatcgaacaaccgccggcctttctcggcgtggcg
cgctcggcgaccggccgggtgtggcgcgaccggctcgatccgcgtggcgccgcgcgggcg
ctggcgatcgcgcagcgctatcagctgccggaaatgctggcccgggtgctggcgggccgc
aatgtcgagatcgacgcggtggaggactttctcgacccgacgatccgcaggctgctgccc
gacccctacagcgtgacgcagatggaagccgccgccaagcggcttgccgacgccgtgctc
ggagcggagacggtggcgatcttcggcgattacgacgtcgacggcgctacctcggcggcg
ctgctggcctggcatttgcggcattgcgggctcgatccgttgatccacattccggaccgc
atcttcgagggctacggccccaatgtcgacgcggtgcggatgctggcttcgaggggcgct
acgctcttgatcacggtggattgcggcaccaccagcctggagccgctcgcggaggccaag
cggctcggcatgagcgtggtggtgatcgatcatcaccaatgcggcgatgagctgccggtc
gtcgacgcgctggtcaatccgaaccgaccggacgatctgtccgggctggggcatctcgcc
gcggtcgggctggtgttcgtcacgctggtggcactcaatcgcgaattgcgcgcgcgcggt
ttctggacgttggagcggccgcagccggagctgctgaacatgctgcatcacgtggcgctc
ggcaccgtcgccgacgtcgcgccgttgaccgggctgaaccgcgccttcgtcgccaagggg
ctgatcgcgatgcggcggcgcgaccatgtcggccacaccgcgctgatggacatagcaagg
ctgaacggcccgcccgacgcgtttcacttgggtttcctgctggggccgcggatcaacgcc
ggcggccgcatcggccgcgccgacctcggcgtgcggctgctgctggagagcgatatttcc
gaagccgccaagatcgccgccgagctcgaccggctcaatgccgagcgccgggtgatcgaa
cagatggccgaagcccaggccgaggctgaagcgctggcggcgctcggcttcgaggacaag
ggctcggtgatcgttaccgcctcggaaggctggcaccccggcgtggtcggcctcgtcgcc
tcgcggctgaaggagaaattttcacgccccgcctttgcgatcgcgctggagccgggcggc
atcggcaccggaagcggccgctcgattcccggcgtcgacctcggcaaagcggtgcgtcag
gcggtcagcgacgggctgctgctgaaaggcggcggccacgccatggcggcgggggtcacg
ctgcgcaaggagaagctcgccgaattccgcgcctatatcgaggcggcgctcgccgccgac
gtcgcgcggtcgcgccacgccaacgagctgttcatcgacggcgcggtgtcagcgcgcgcg
gtgacgccggatctggtggcgacgctgaaccgcgccgggccgttcggctccggcaatccg
gagccggtgctggcgctgccgtcgcatcaattggtctatgccgacgaggtcggccaggcg
catctgcggctgcgcttcaaatccggcgacggcgcgatcgtcaacggcatcgcgtttcga
agcgtcggccagaagctcggcaacgcgctgcaggaaaatcgcggccagccgctgcacgtc
gccggctgcctcacggtggatcgctggcagggcaacgagcgggtgcagctgcgcgtcacc
gacgtcgcggtgccggatccagggccagcggtgatccggtaa
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