Rhodopseudomonas palustris BisB18: RPC_3703
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Entry
RPC_3703 CDS
T00336
Name
(GenBank) DEAD/DEAH box helicase-like
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpc
Rhodopseudomonas palustris BisB18
Pathway
rpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RPC_3703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpc03019
]
RPC_3703
Enzymes [BR:
rpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RPC_3703
Messenger RNA biogenesis [BR:
rpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RPC_3703
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
HEM4
SUa-2TM
Fe-ADH
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABD89238
UniProt:
Q210E8
LinkDB
All DBs
Position
4125896..4127341
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AA seq
481 aa
AA seq
DB search
MERTNLLTSFQDFGLAEAITRALKEENYLTPTPIQAQTIPLAMAGRDVVGIAQTGTGKTA
SFALPIIHRLLENRIKPQPKTCRVLVLSPTRELSGQILESFNAYGRHVRLTSALAIGGVP
MGRQVRSIMPGLDVLVATPGRLLDLVQTNALKLNQVEFLVLDEADRMLDMGFINDIRKIV
AKLPIKRQTLFFSATMPKDIADLADQMLRDPARVAVTPVASTVERITQRIIQVDHSAKPT
LLAQILKQENVNRALIFTRTKHGADKVVKGLARAGITADAIHGNKSQNHRERVLAAFRAG
EIRTLVATDIAARGIDVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGIAISLVAGEEM
AFLRDIEKLIRITLPREDRRTPGHRDTVAKVSQHRGAHAAPHVHSPRSNEVAPSSNGPRR
RRRPTGGTIAAPVARHEPSRHEPTARPQPQAAAKEGIQGVAFLHRESRPGTQPNRKQRPQ
R
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaaccaaccttttgacctcctttcaggatttcggcctggccgaagctattacg
cgtgcgcttaaagaagaaaattacctgaccccgacgccgattcaggctcaaaccattccc
cttgctatggctggccgcgacgtcgtcggcatcgcccagaccggcaccggcaagaccgcc
tccttcgcgctcccgatcatccaccgcctgttggaaaaccgcatcaagccgcagccgaag
acctgccgcgtgctggtgctgagcccgacccgcgaactctccggtcagatcctggagagc
ttcaacgcctatggccgtcacgtccgcttgacctcggcgctagcgatcggcggcgtgccg
atgggccgccaggtccgctcgatcatgccgggcctcgacgtgctggtggcgacgccgggc
cgactgctcgacctcgtgcagaccaatgcgctgaagctcaatcaggtcgagtttctggtg
ctcgacgaagccgaccgcatgctcgacatgggcttcatcaacgacatccgcaaaatcgtc
gccaagctgccgatcaagcggcagacgctgttcttctcggccaccatgccgaaggacatc
gccgacctcgccgaccagatgctgcgcgatccggcgcgggtcgccgtgaccccggtggcc
tccaccgtggaacgcatcacccagcgcatcatccaggtcgaccattccgccaagccgacc
ctgctggcgcagatcctcaagcaagagaacgtcaaccgggcgctgatcttcacccgcacc
aagcatggcgcggacaaggtcgtgaagggcctggcgcgcgccggcatcaccgccgacgcg
atccacggcaacaagtcgcagaaccaccgcgagcgcgtgctggcggcgttccgcgccggt
gaaatccgcactctggttgctaccgacatcgccgcccgcggcatcgacgtcgacggcatc
acccatgtggtgaatttcgatctgccgaacattccggagacctacgtccatcgcatcggc
cgcaccgcgcgcgccggcgccgagggcatcgcgatctcgctggtcgccggcgaagagatg
gcgttcctgcgcgacatcgagaagctgatccgcatcaccctgccgcgcgaagatcgccgc
acccccgggcatcgcgataccgtggcgaaggtatcgcagcatcgcggcgcccatgccgcg
ccgcacgtgcattcgccgcgcagcaatgaggtcgcgccatcgtcgaacggcccgcgtcgc
cggcgtcggccgaccggtggtactatcgccgccccagtcgcccggcatgaaccgagccgg
cacgaacccaccgcccgcccgcagccgcaggcggctgccaaggaaggcatccagggcgtg
gctttcctgcatcgcgaaagccgccccggaacccaacccaaccgcaaacaaagaccgcag
cgctga
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