KEGG   Rhodopseudomonas palustris BisB18: RPC_4489
Entry
RPC_4489          CDS       T00336                                 
Name
(GenBank) CRISPR-associated endonuclease, Csn1 family
  KO
K09952  CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
Organism
rpc  Rhodopseudomonas palustris BisB18
Brite
KEGG Orthology (KO) [BR:rpc00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rpc02048]
    RPC_4489
Prokaryotic defense system [BR:rpc02048]
 CRISPR-Cas system
  Type II CRISPR-Cas system
   Type II signiture cas proteins
    RPC_4489
SSDB
Motif
Pfam: HNH_4 RuvC_III Cas9_a Cas9_RuvC
Other DBs
NCBI-ProteinID: ABD90012
UniProt: Q20XX4
LinkDB
Position
complement(4997995..5001195)
AA seq 1066 aa
MSERVVRRILGIDLGIASCGWGVVDISGAGGGIIATGVRCFDAPLIDKTGEPKSATRRTA
RGQRRIVRRRRQRMNGVRRLLCEFGLLPDPRPDALNQAMRRISTASAAAQVTPWTLRAAA
HQRLLSNEELAVVLGHIARHRGFRSNAKNEAGANAADETSKMKKAMEATREGLAKYHAFG
DMIANDPKFANRKRNRDKDYSHTAKRSDLEDEVRAILRAQLRFGSAAATETLAQTFADVA
FFQRPLQDSEDRVGDCPFEPGQKRAARRAPSFELFRFLSRLANLKLAVGRSPERRLTAEE
IALAAKGFGETKKTITFKSLREALDLDPNARFSGIGKDKEASLDVVARTGGAAYGTKTLK
DALGDAPWRSLSRTPETLDRIAEILSFREDITSIRNGLEDLGLDSLVVEALMQAAANGDF
KEFTRAGHISARAARNIIPGLREGLVYSEACARVGYDHAARLSVPLDQVGSPVTRKALSE
ALKQVRAVAREYGPIDYFHIELARSVGKSAEERKQLTDGIEARNVEKAKRRKQAEEHLGR
APSDDELLRYELAKEQNFKCIYSGDAIDPAGVAANDTRYQVDHILPWSRFGDDSYLNKTL
CTARSNQNKRGRTPFEWFEADKTDVEWMEYVARVENLQEVKGRKKRNYSIKDAAAIEDKF
KARNLTDTQWATRLLADELSRMFPPRECERAICGRADGGNDGLTIVEERRVFTRPGAITS
KLRRAWGLEGLKKQDGKRVEDDRHHAVDALVLAATTESLLQRLTVEVQRREREGRPDDIF
HCAEPWRGFRADVRRTVYGSETMPGIFVSRAERRRARGKAHDATIKQIREIEGERLVFER
KPVEKLTDKDLEKIPIPKPYGQVSDPKRLRDELVESLRAWIAAGKPKDRPPLSPKGDVIR
KVRIQTNDKVSVEINGGTVDRGDMARVDVFRKKNKKAVWEYYVVPIYPHQIVALNDPPDR
AVIAYAEDKDWKEIDSSYEFLWSLFGLSYVEISKANGECIDGYFRGLHRGTGAASVCKHI
SLGKDATVSGIGLKTLASFKKFTIDRLGRKFEIPREVRTWRGEACT
NT seq 3201 nt   +upstreamnt  +downstreamnt
atgagtgagcgtgttgtccggcgtattctcggaattgacctcggtatagcatcgtgcgga
tggggggtcgtcgacataagcggggccgggggaggtatcatcgctaccggcgtccgctgt
ttcgacgcccctctgatcgacaagaccggcgagccaaagagcgcaacgcgccgcaccgcg
cgtgggcagcggcggatcgttcgccgccgccggcagcgcatgaatggcgtccgccgcttg
ctttgcgagtttggtctgcttcccgatccgcgaccggacgctctcaatcaggcgatgcgc
cgaatttcgacagcttcggcagcagcgcaagtcacgccgtggacgcttcgcgccgccgca
catcagcgtcttttgagcaacgaagaactcgcggtcgttcttggtcatatcgctcggcat
cgcggctttcggtcgaacgccaagaacgaggccggcgcgaatgccgcggacgaaacctcc
aagatgaaaaaggcgatggaggccacgcgcgaggggctcgcaaagtatcatgctttcggc
gacatgatcgccaacgatccaaagttcgcgaaccgcaagcgcaatcgcgacaaggactac
tcgcacaccgcgaaacgctccgatctcgaggacgaggttcgcgcaatccttcgcgctcag
cttcgatttggcagcgcggccgctaccgagacgctggcgcaaacatttgcggacgtcgca
ttctttcagcgtccgctgcaggacagcgaagacagggtgggcgattgcccgtttgaaccg
ggacagaagcgcgccgcgcggcgcgcaccttcgttcgagctgttccgttttctctcccga
ctggcgaatctcaaattggccgtgggccgatcgccggagcggcgactgaccgcggaggaa
atcgcgttggccgccaagggcttcggcgaaaccaagaagaccatcacgttcaaatcgctg
cgcgaggcgctcgacctcgatccgaacgcgcggttttccggcatcggcaaggacaaggaa
gcatcgctcgacgtcgtcgcgcggaccggcggtgcagcctatggaacgaagacgttgaag
gatgcgctgggtgatgcgccgtggcgatcgctgtcgcgaacgccagaaacactcgatcgt
atcgccgaaatcctgtcgttccgcgaggacatcacatcgatccgcaatgggcttgaagac
ctcggtctcgatagcctcgtcgtcgaggccctgatgcaggcggcggccaatggcgatttc
aaggagttcacccgggccgggcacatctcggcgcgcgcggcacgcaatatcatccccgga
cttcgcgaagggttggtctattcggaggcctgcgcgcgcgttggctacgatcatgccgcg
cggttgtcggtcccgctcgatcaggttggcagcccggtgactcggaaggcgctgagcgag
gctcttaagcaagtgagagcggtggcgcgcgaatacggaccgatcgactactttcatatt
gaactcgcgcgctcggtcggaaaaagcgccgaggagcgcaagcagctcacggatggcatc
gaagcgagaaacgtcgagaaggcgaagcggcgcaagcaagctgaggaacacctcggccgc
gcccccagcgacgacgagctcttgcgatacgaactcgccaaggaacagaacttcaagtgc
atctattccggcgatgcgatcgatcccgcaggggtcgcggccaacgatacccgctatcag
gtcgaccacatcctgccgtggagccggttcggcgacgattcgtatctgaacaagacgctc
tgcaccgcgaggtccaatcagaacaagcgcgggcgcacgccgttcgagtggttcgaggcc
gacaaaaccgacgtcgaatggatggagtacgttgcgcgcgtcgaaaacctccaggaggtc
aaggggcgcaagaagcgaaactacagcatcaaggatgcggcggcgatcgaggacaaattc
aaggcccgcaacctcaccgatacgcaatgggccactcggctgctcgccgacgaactctcg
cgaatgttcccgccgcgcgagtgcgagcgggcgatttgcggtcgggcggacggcggcaac
gacggattgacgatcgtggaggagcggcgggtgttcacccgaccgggggccatcacctcc
aaactgcggcgggcctggggcctggagggcctgaagaagcaggatggcaagcgggtcgag
gacgaccggcatcacgccgtcgatgcgctggtgctggccgccaccaccgagagcctgctg
cagcgcctgacggtcgaagtccaaaggcgcgagcgcgagggccgcccggacgacatcttt
cattgcgccgagccctggcggggcttccgcgccgatgttcgacgcacggtctatgggtcg
gagaccatgcccgggattttcgtctcgcgcgccgagcgtcggcgcgcgcgcggcaaggcg
cacgacgccaccatcaaacagattcgcgaaatcgaaggcgagaggctggtgttcgagcgt
aagccggtcgaaaaactgacggacaaggacctggagaagattccgattccgaagccgtac
gggcaggtgagcgatcccaagcggttgcgggatgaactggtggaaagtctgcgcgcgtgg
atcgcggccggcaagccgaaagacaggccgccgctgtctccgaagggcgatgtcattcgc
aaggttcggatacagaccaacgacaaagtatcagtcgagatcaatggcggcaccgtcgat
cgcggcgacatggcgcgcgtggatgttttcaggaagaaaaacaagaaagctgtttgggaa
tattatgttgtgccgatctatccgcatcagatcgttgcactgaacgatccgccggaccgc
gccgtgatcgcttatgcggaggacaaggattggaaagagatcgacagcagttatgagttt
ctttggtcgctgttcgggttgtcctatgtcgaaatatcgaaagcgaacggggagtgcatc
gacggttactttcgtggtcttcatcgcggcacgggagcagcaagcgtctgcaagcatatc
tcgctcggcaaagatgcaacggtcagcggaatcggactgaaaacccttgcatcgttcaaa
aaattcaccatcgaccggctcggacgaaaatttgaaattccgcgcgaggtgcgtacatgg
cgtggcgaggcctgcacctga

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