Rhodopseudomonas palustris BisB18: RPC_4857
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Entry
RPC_4857 CDS
T00336
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rpc
Rhodopseudomonas palustris BisB18
Pathway
rpc03030
DNA replication
rpc03410
Base excision repair
rpc03420
Nucleotide excision repair
rpc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPC_4857
03410 Base excision repair
RPC_4857
03420 Nucleotide excision repair
RPC_4857
03440 Homologous recombination
RPC_4857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpc03032
]
RPC_4857
03400 DNA repair and recombination proteins [BR:
rpc03400
]
RPC_4857
Enzymes [BR:
rpc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RPC_4857
DNA replication proteins [BR:
rpc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPC_4857
DNA repair and recombination proteins [BR:
rpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RPC_4857
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPC_4857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ABD90379
UniProt:
Q20WV7
LinkDB
All DBs
Position
5419471..5422536
Genome browser
AA seq
1021 aa
AA seq
DB search
MPKTSEHAASSVAVKAPSKGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNM
LWKLLREMPNDERPTHLAIIFDKAEKTFRNELYPLYKAQRPPAPDDLIPQFALIREAVRA
FDLPCLEQIGFEADDLIATYVRQACERGATATIVSSDKDLMQLVTDCVTMFDTMKDRRIG
IPQVIEKFGVPPDKVVEVQALAGDSVDNVPGVPGIGVKTAAQLINEYGDLDTLLARAAEI
KQPKRREALIANAEKARISRQLVLLDDKVALDVPLDELAVHEPDARKLIAFLKAMEFSTL
TRRVAEYSQIDPADVEADAAVKSGTSSPSPLAGEGRGGGATDAGDLFGAPPSPTLPRKGG
GSAPQTGQGLASSAPQSSDALTPQLLAAARAEEARKIPVNRDGYATLRTRDELHGWIAKI
HDLGHVALEAKATFDIKSAVVDPMQAELTGLALALGPNEACYVPLGHRQSGDAAGLFASG
LEPDQIAARDALEALRPILESPGVLKIGFNIKFTAVLLAQHGITLQNADDVQLMSYALDA
GRHAHGLDALAETWLGHKTLSYGEVIGSGKAKLSFDQVAIDRATCYAAEDADVALRLWRV
LKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIEAEIRE
IAGEEINIGSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELAEQGHEFPRKILDWR
QVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRR
AFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMPS
EVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCRA
HGFVETLFGRKCHYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMVRMEDALAEKK
LSAQMLLQVHDELIFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNWDEA
H
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaacctctgaacacgccgcgtcctccgtcgccgtcaaagccccgagcaagggc
gaccacgtctttctggtcgacggttcgtcgtatattttccgcgcctaccacgcgctgccg
ccgctcaaccgcaagtccgacgggctgcaggtcaacgccgtgctgggtttctgcaacatg
ctgtggaagctgctgcgcgaaatgccgaacgacgagcggccgacccatctggccatcatc
ttcgacaaggcggaaaagaccttccgcaacgaactctatcctctctacaaggcgcagcgg
ccgccggcgccggacgatctgatcccgcaattcgcgctgatccgcgaggcggtgagggcg
ttcgatctgccctgcctggaacagatcggcttcgaggccgacgatctgatcgcgacctat
gtgcggcaggcctgcgaacgcggcgccaccgccaccatcgtctcctccgacaaggacctg
atgcagctcgttaccgactgcgtcaccatgttcgacaccatgaaggaccgccgcatcggc
atcccgcaagtgatcgagaagttcggcgtgccgcccgacaaggtggtcgaggtgcaggcg
ctggccggcgacagcgtcgacaacgttccgggggtgccgggcatcggcgtcaagaccgcg
gcgcaattgatcaacgagtatggcgatctcgacacgctgctcgcccgcgccgccgagatc
aagcagccgaagcgccgcgaggcgctgatcgccaacgccgagaaggcgcggatctcgcgg
cagctggtgttgctcgatgacaaggtcgcgctcgacgtgccgctcgacgaactcgcggtg
cacgagccggatgcgcgaaaactgatcgcgtttctgaaggcgatggaattctccacgctg
acgcggcgggtcgcggagtattcgcagatcgatccggccgacgtcgaggccgatgctgcg
gtgaagagcgggacgtcttctccctccccccttgcgggggagggtcggggtgggggggcc
acggacgccggcgatctttttggggcacccccctccccaaccctcccccgcaagggggga
gggagcgcgccgcaaacggggcaaggccttgcctcatcggcgccgcaatcgagcgatgcc
ctcaccccgcaactcctcgccgccgcgcgggccgaagaggcgcggaagattccggtcaac
cgcgacggctacgccacgctgcgcacgcgcgacgaactgcacggctggatcgcgaaaatc
cacgacctcggccatgtcgcgctggaggccaaggccaccttcgacatcaagagcgcggtg
gtcgatccgatgcaggcggagttgaccgggctggcgctggcgctgggccccaatgaggcc
tgctacgttccgctcggccatcggcaatccggcgacgccgcgggactgttcgcttccggg
ctcgaacccgatcagatcgccgcccgcgacgcgctggaagcgctgcggccgatcctggaa
tcccccggcgtgctgaagatcggcttcaacatcaaattcaccgcggtgctgctggcgcag
cacggcatcacgctgcagaacgccgacgacgtgcagctgatgtcctatgcgttggacgcc
ggccgccacgcccacgggctcgacgccctcgccgagacctggctcggccacaagacgctg
agctatggcgaggtgatcggcagcggcaaggccaagctgtcgttcgaccaggtcgcgatc
gaccgcgccacctgctacgccgccgaggatgccgacgtcgcgctgcggctgtggcgggtg
ttgaagccgcggctggtcgccgaacgcatgaccacggtttacgagacactggagcggccg
ctgatcggcgtgctggcgcggatggagcggcgcggcatctcgatcgaccgcgcagtgctg
gcgcggctgtccggcgatttcgcccagaccgcggcgcgcatcgaggcggagatccgcgag
atcgccggcgaagagatcaatatcggcagcccgaagcagctcggcgacattttgttcggc
aagatgcagctgcccggcggctccaagaccaagaccggggcgtggtcgacctcggcgcag
gtcctggaagagctcgccgagcagggccacgaattcccgcgaaaaatcctggattggcgg
caggtgtcgaagctgcgctcgacctatacggacgcgctgccgacctacgtgcatccgcag
acccaccgggtgcacaccacctacgcgctggccgcgaccaccaccggacggctgtcgtcg
aacgaacccaacctgcagaacatcccggtgcgcaccgaggacggccgcaagatccgccgc
gccttcatcgccgcccccggccacaagctggtgtcggcggattattcccagatcgagctg
cggctgctcgccgaaatcgccgacatcccggtgttgaaacaggcgttccaggacggtctc
gacatccacgccatgaccgcctcggaaatgttcggggtgccgatcaaggacatgccgagc
gaggtgcggcgccgcgccaaagcgatcaatttcggcatcatctacggcatctcggcgttt
gggctggccaaccagctcggcattccgcgcgaggaggccggcgcctatatcaagaagtac
ttcgagcgctttcccggcatccgcgcctatatggacgccacccgcgacttctgccgcgcc
catggctttgtcgaaacgctgttcggccgaaaatgccattaccccgacatcaaggcctcg
aacgcctcggtgcgcgccttcaacgagcgcgccgcgatcaacgccaggctgcagggcacc
gccgccgacatcatccgccgcgccatggtgcggatggaagacgcgctggccgaaaagaaa
ttatcggcgcagatgttgttgcaggtgcacgacgaattgatcttcgaggtggccgacgac
gaggtcgcggcaacgctgccggtggtgcagcaggtgatgcaggacgccccgttcccggcg
gtgctgctgtcggtgccgctgcaggtcgacgcgcgcgcggcgaacaactgggacgaggcg
cattga
DBGET
integrated database retrieval system
