Rhodopseudomonas palustris BisB5: RPD_0178
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Entry
RPD_0178 CDS
T00345
Name
(GenBank) sigma-54 factor, core-binding region
KO
K03092
RNA polymerase sigma-54 factor
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd02020
Two-component system
rpd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RPD_0178
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RPD_0178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpd03021
]
RPD_0178
Transcription machinery [BR:
rpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RPD_0178
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ABE37418
UniProt:
Q13ES1
LinkDB
All DBs
Position
201922..203562
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AA seq
546 aa
AA seq
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MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLAVFVEDELEKNPLLDRASDNAEPLV
AGEASMDRAENAGDEFGGSEAGGEASDFADNAGGDSFEPGSEEWMHRDLGSRSEIEQTLD
TGMENVFPEEPAEAAARAAQDAAPASYTEWGGGASSDEGYNLEAFVAAETSLADHLSEQL
AVALSSPSERMIGQYLIDLVDDAGYLPADLGEAAERLGTTQTEVEAVVGVLQTFDPPGIC
ARSLAECLAIQLRELDRFDPAMQALIEHLDLLAKRDVVSLRKICGVDDEDLADMIGEIRH
LDPKPGLKFNSSRVQTVVPDVFVRPGPDGGWLVELNSDTLPKVLVNQSYYSELSKTIRKD
GDKSYFSDCLQTATWLVRALDQRARTILKVATEIVRQQDGFFTHGVAHLRPLNLKAVADA
IQMHESTVSRVTANKYMATNRGTFELKYFFTASIASADGGEAHSAEAVRHHIRQLIDGED
PSAILSDDTIVERLRGAGIDIARRTVAKYREAMRIPSSVQRRRDKHSMLGTALTAPADRS
RDTAPA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcacgcaacgcctcgaatttcgccaatcgcagtcgctggtgatgacgccgcag
ctgatgcaggcgatcaagctgctgcaactgtccaatttggatctcgcggtgttcgtcgag
gacgagctcgagaagaacccgctgctggaccgcgccagcgacaacgccgaaccgctggtt
gccggcgaagcgtcgatggaccgcgccgagaatgcgggtgacgagttcggcggcagcgag
gccggcggcgaggcatcggacttcgccgacaacgcaggcggcgattccttcgagccgggc
agcgaagaatggatgcaccgcgatctcggcagccgcagcgagatcgagcagacactcgat
accggcatggagaacgtgttcccggaggagccggccgaggctgcggcccgcgccgctcag
gacgcggcgccggcgtcatataccgagtggggcggcggcgcctccagcgacgagggctac
aatctcgaagccttcgttgcggccgagacctcgctggccgaccatctcagcgagcagctc
gcagtcgcgctgtcctcaccatcggaacgcatgatcgggcaatatctgatcgacctcgtc
gacgatgcgggctacctgccagccgatctcggtgaggccgccgagcgtctcggaacgacc
cagaccgaagtcgaagccgtggtcggcgtgctgcaaaccttcgacccgccgggcatctgc
gcgcgttctttggccgaatgcctcgccattcaattgcgtgaactcgaccggttcgacccg
gcgatgcaggcgctgatcgagcacctcgatctcttggccaagcgcgacgtcgtcagcttg
cgcaagatttgcggcgtcgatgacgaggacctcgccgacatgatcggcgaaatccgtcac
ctcgatccgaaacctggcctgaagttcaactcctctcgcgtgcagaccgtcgtgcccgat
gtgttcgtgcgccccggccccgacggaggctggctggtcgaactcaacagcgacacgctg
ccgaaggtgctggtcaaccagtcctattactcggagttgtcgaagacgatccgcaaggat
ggcgacaaatcctacttctccgactgcctgcagaccgcaacctggctggtgcgcgcgctc
gaccagcgcgctcgcaccattttgaaggtcgcgaccgagatcgtgcgccagcaggacggc
ttcttcacccacggcgtcgcgcatctgcgaccactgaatctgaaagcggtggccgacgcg
atccagatgcacgagtcgacggtgtcgcgcgtgaccgccaacaaatatatggcgaccaac
cgtggcacgttcgaactgaagtatttctttaccgcgtcaatcgcctccgccgatggcggc
gaggcgcattccgccgaagccgttcgtcatcacatccggcaattgatcgatggcgaggat
ccgtcagcaattctgtcggacgacacgatcgtggagaggctgcgcggagccggcatcgat
atcgcacgtcgtaccgtcgcgaaatatcgcgaggcgatgcgcatcccctcgtcggtgcaa
cggcgacgcgacaagcacagcatgctcggcacggccctgacggcgccagccgatcggtcc
cgcgacaccgctccggcttga
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