Rhodopseudomonas palustris BisB5: RPD_0479
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Entry
RPD_0479 CDS
T00345
Name
(GenBank) succinate dehydrogenase subunit A
KO
K00239
succinate dehydrogenase flavoprotein subunit [EC:
1.3.5.1
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd00020
Citrate cycle (TCA cycle)
rpd00190
Oxidative phosphorylation
rpd00650
Butanoate metabolism
rpd00720
Other carbon fixation pathways
rpd01100
Metabolic pathways
rpd01110
Biosynthesis of secondary metabolites
rpd01120
Microbial metabolism in diverse environments
rpd01200
Carbon metabolism
Module
rpd_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rpd_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
rpd_M00149
Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RPD_0479
00650 Butanoate metabolism
RPD_0479
09102 Energy metabolism
00190 Oxidative phosphorylation
RPD_0479
00720 Other carbon fixation pathways
RPD_0479
Enzymes [BR:
rpd01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
RPD_0479
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_2
Succ_DH_flav_C
Pyr_redox_2
GIDA
DAO
HI0933_like
Thi4
Motif
Other DBs
NCBI-ProteinID:
ABE37717
UniProt:
Q13DX2
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All DBs
Position
complement(553099..554922)
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AA seq
607 aa
AA seq
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MAANGNGAPAVNGHAYPIEDHVYDVVVVGAGGAGLRAVVGCSEAGLRTACITKVFPTRSH
TVAAQGGISAALGNMHKDDWRWHMYDTVKGSDWLGDQDSIEYMVRNAPEAVYELEHWGVP
FSRTEEGKIYQRPFGGMTMEFGKGQAQRTCAAADRTGHAMLHTMYGQALRHAAEFYIEFF
AIDLIMDDQGCCRGVIALKLDDGTLHRFRAQTTILATGGYGRAYASCTSAHTCTGDGGAM
ALRAGLPLQDMEFVQFHPTGIYGSGCLVTEGARGEGGYLVNSEGERFMERYAPSAKDLAS
RDVVSRAMTIEMREGRGVGKKKDHIFLHLDHLAPEVLAERLPGISESARIFAGVDVTREP
IPILPTVHYNMGGIPTNFRGEVVTKKEGDDNAVVPGLMAIGEAACVSVHGANRLGSNSLI
DLVVFGRAAALRCAEKLTINGKQPELPADSADGTLSRLDKYRYASGGTPTAKLRESMQQV
MQNNCAVFRTGEVLSEGKDLIRKVHGGVGDIGVSDRSLVWNSDLVETLEFDNLIIQAVVT
MNSAANRTESRGAHAREDFPDRDDKQWMKHTLAWIGDDGDTTIDYRPVHDYTMTNDVQYI
PPKPRVY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaacggcaacggcgcaccggccgtgaacggccacgcctatccgatcgaagac
cacgtctatgatgtcgtcgtggtcggcgccggcggcgcaggtttgcgcgcggtggtgggc
tgcagtgaggcggggcttcgcaccgcctgcatcaccaaggtgtttccgacccgctcccac
accgtggcggcgcagggcggcatctcggccgcgctcggcaacatgcacaaggacgactgg
cgctggcacatgtacgacaccgtgaaggggtcggactggctcggcgaccaggattcgatc
gaatacatggtgcgcaacgcgcccgaggcggtctacgagctcgaacattggggcgtgccg
ttctcgcgcaccgaagaaggcaagatctatcagcgcccgttcggcggcatgaccatggaa
ttcggcaagggccaggcgcagcgcacctgcgccgccgccgaccgcaccggccatgcgatg
ctgcacacgatgtacggccaggcgctgcgccacgccgccgaattctacatcgagttcttc
gcgatcgacctgatcatggacgatcaaggctgttgccgcggcgtgatcgccctgaaactc
gacgacggcacgctgcatcgtttccgcgcccagaccaccattctggccaccggcggctac
ggccgcgcctacgcctcctgcacctcggcgcacacctgcaccggcgacggcggcgcgatg
gcgctgcgcgccggtctgccgctgcaggacatggagttcgtccagttccacccgaccggg
atctatggttcgggctgcctcgtcaccgagggcgcccgcggcgagggcggctatctggtc
aattccgaaggcgagcgcttcatggagcgctacgcgccgtccgccaaggatctcgcctcg
cgcgacgtggtgtcgcgcgcgatgacgatcgaaatgcgcgagggccgcggcgtcggcaag
aagaaagaccacatcttcctgcatctcgaccatctcgcgccggaagtgctggcggagcgg
ctgccgggcatctcggaatcggcgcggatcttcgccggcgtcgacgtcacccgcgagccg
atcccgatcctgccgaccgtgcactacaacatgggcggcatcccgaccaatttccgcggt
gaggtcgtcaccaagaaggaaggcgacgacaacgccgtggtgccgggcctgatggcgatc
ggcgaggccgcctgcgtctccgttcacggcgccaaccgcctcggctccaactcgctgatc
gacctcgtggtgttcggccgcgccgcggcgctgcgctgcgccgagaagctgacgatcaac
ggcaagcagccggagcttccggcggattccgccgatggcacgctgtcgcggctcgacaaa
tatcgctacgcctcgggcggcaccccgaccgccaagctgcgcgagagcatgcagcaggtg
atgcagaacaactgcgcggtgttccgcaccggcgaggtgctgagcgagggcaaggacctg
atccgcaaggtgcatggcggcgtcggcgatatcggcgtgtccgaccgctcgctggtgtgg
aattccgacctggtcgagacgctggaattcgacaatctgatcatccaggcggtggtgacg
atgaactcggccgccaaccgcaccgagagccgcggcgcccatgcgcgcgaggacttcccg
gatcgcgacgacaagcagtggatgaagcacacgctggcctggatcggcgacgacggcgac
accacgatcgattatcgcccggttcacgactacacgatgaccaacgacgtccagtacatc
ccgccgaagccgcgggtgtattga
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