Rhodopseudomonas palustris BisB5: RPD_0807
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Entry
RPD_0807 CDS
T00345
Name
(GenBank) 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd00071
Fatty acid degradation
rpd00280
Valine, leucine and isoleucine degradation
rpd00310
Lysine degradation
rpd00362
Benzoate degradation
rpd00380
Tryptophan metabolism
rpd00410
beta-Alanine metabolism
rpd00640
Propanoate metabolism
rpd00650
Butanoate metabolism
rpd00907
Pinene, camphor and geraniol degradation
rpd00930
Caprolactam degradation
rpd01100
Metabolic pathways
rpd01110
Biosynthesis of secondary metabolites
rpd01120
Microbial metabolism in diverse environments
rpd01200
Carbon metabolism
rpd01212
Fatty acid metabolism
Module
rpd_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RPD_0807
00650 Butanoate metabolism
RPD_0807
09103 Lipid metabolism
00071 Fatty acid degradation
RPD_0807
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RPD_0807
00310 Lysine degradation
RPD_0807
00380 Tryptophan metabolism
RPD_0807
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
RPD_0807
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
RPD_0807
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RPD_0807
00930 Caprolactam degradation
RPD_0807
Enzymes [BR:
rpd01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
RPD_0807
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
RPD_0807
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
RPD_0807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
ECH_2
3HCDH
DAO
NAD_binding_2
UDPG_MGDP_dh_N
FAD_binding_3
F420_oxidored
NAD_binding_8
ApbA
Pyr_redox_2
GIDA
Pyr_redox
Sacchrp_dh_NADP
NAD_Gly3P_dh_N
2-Hacid_dh_C
Histone_HNS_N
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
ABE38045
UniProt:
Q13CZ4
LinkDB
All DBs
Position
910168..912384
Genome browser
AA seq
738 aa
AA seq
DB search
MSYSNFKIETDSDGIALVTWDLPGRSMNVLDTKTIEELGAIVEQTTKDAAVKGVVITSAK
EAFCAGADLSMLEGMNKTFAQIRKEKGEEAAQQMLFDESRKLSQILRGIETSGKPWVAAI
NGLALGGGFEVTLACHYRVAADNPKTRLGLPEIKVGLFPGGGGTQRIPRIVQPQDSLTIL
LKGDQIKLDKAKAWKLVDAVVPAADLIKAAKDWIKGGGKAVAPWDEKGFKLPGGPVFSKQ
GMMMFPAGNAIYRRETYDNYPAARAIMSCVYEGLQVPMDVALRIESRYFAQVVQTKEAAA
MIRSLFLSMQELNKGARRPQGVPPTKVKKLAIIGAGFMGASVGYVSAKAGIDVVLIDRDQ
ESADKGKAHCKSVIDGLIAKGRAKEADRDALLARITATPDFNAIKDCDLVIEAVFEDRKV
KADTYAKAQPLLKEGAIFASNTSTLPINSLAEEFKDQSKFIGIHFFSPVEKMMLVEVIMG
NNTGDVALATALDYTRQIGKTPIVVNDSRGFFANRCVLRFTAEGLEMLLEGVPPAMIETA
AKMAGMPVGPLSLADEVALDLIVKIMKATEVDLGEQAVDQAQKKLMIEMVEKQGRFGRKN
AKGFYDYPEKGKGQKALWSGIGALQPKQLDPDTIDVEELKQRFLVVQAVEAARTVEDNVI
VDPREADVGSILGFGFAPFTGGTLSYIDFMGTKEFVALCHKLEGKFGSRFTPPKLLEDMA
KTGDTFYHRFAPKKQAAA
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagctacagcaacttcaagatcgagaccgactccgacggcatcgcgctcgtgacctgg
gatcttcccgggcgctcgatgaacgtgctcgataccaagaccatcgaggaactcggtgcg
atcgtcgagcagaccaccaaggacgccgccgtcaagggcgtggtgatcacgtccgccaag
gaggcgttctgcgccggcgccgacctgtcgatgctggaaggcatgaacaagaccttcgcg
cagatccgaaaggagaagggcgaggaagccgcgcagcagatgctgttcgacgagagccgc
aagctgtcgcagatcctgcgcgggattgaaacctccgggaagccgtgggtcgcggcgatc
aacggcctcgcgctcggcggcggcttcgaggtgacgctggcctgccattatcgcgtggcc
gccgacaatccgaagacccggctcggcctgcccgagatcaaggtcggcctgttcccgggc
ggcggcggcacccagcggattccgcgcattgtgcagccgcaggattcgctgacgatcctg
ctcaagggcgatcagatcaagctcgacaaggccaaggcatggaagctggtcgacgccgtg
gtgccggctgcggacctgatcaaggccgcgaaggactggatcaagggcggcggcaaggcg
gtcgcgccgtgggacgagaagggcttcaagctgccgggcggcccggtgttctcgaagcag
ggcatgatgatgttcccggccggcaacgccatctatcgccgcgagacctacgataactat
ccggcagcgcgtgccatcatgagctgcgtctatgaaggcctgcaggtgccgatggacgtc
gcgctgcgcatcgagtcgcgctatttcgcgcaggtggtacagaccaaggaagcggcggcg
atgatccgcagcctgttcctgtcgatgcaggagctgaacaagggcgcgcgccgtccgcag
ggcgtgccgccgaccaaggtcaagaagctcgccatcatcggcgcaggcttcatgggcgcc
agcgtcggttacgtctcggccaaggccggcatcgacgtcgtgctgatcgatcgcgaccag
gagagcgccgacaagggcaaggcgcactgcaaatcggtgatcgacgggctgatcgccaag
ggtcgcgccaaggaagccgaccgcgacgcgctgctggcgcgcatcaccgcgacgccggac
ttcaacgcgatcaaggattgcgacctggtgatcgaggcggtgttcgaggatcgcaaggtc
aaggccgacacctacgccaaggcgcagccgctgctgaaggaaggcgcgatcttcgcctcc
aacacctcgacgctgccgatcaactcgctggccgaggagttcaaggaccagtcgaagttc
atcggcatccacttcttctcgccggtcgagaagatgatgttggtggaagtgatcatgggc
aacaacaccggtgacgtggcgctggcgaccgcgctcgactacacccgccagatcggcaag
accccgatcgtggtgaacgacagccgcggcttcttcgccaaccgctgcgtgctgcgcttc
accgccgagggcctggagatgctgctcgaaggcgtgccgccggcgatgatcgaaaccgcc
gccaagatggccggcatgccggtaggcccgctgtcgctcgccgacgaagtcgcgctcgat
ctgatcgtgaagatcatgaaggccaccgaagtcgacctcggcgaacaggcggtcgatcag
gcgcagaagaagctgatgatcgagatggtggagaagcagggccgcttcggccgcaagaac
gccaagggcttctacgactatccggagaagggcaagggccagaaggcgctgtggagcggc
atcggcgcgctgcagccgaagcagctcgatcccgacaccatcgacgtcgaggagctgaag
cagcgcttcctggtggtgcaggcggtggaagccgcgcgcacggtcgaggacaacgtcatc
gtcgatccgcgcgaagcggatgtcggctcgatcctcggcttcggcttcgcgccgttcacc
ggcggcacgctgagctacatcgacttcatgggcaccaaggagttcgtggcgctgtgccat
aagctcgaaggcaaattcggctcgcgcttcacgccgccgaagctcttggaagacatggcc
aagaccggcgacaccttctaccaccgcttcgccccgaagaagcaggcggcggcgtag
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