Rhodopseudomonas palustris BisB5: RPD_1899
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Entry
RPD_1899 CDS
T00345
Name
(GenBank) phage SPO1 DNA polymerase-related protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPD_1899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_1899
Enzymes [BR:
rpd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RPD_1899
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RPD_1899
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
SEF14_adhesin
Motif
Other DBs
NCBI-ProteinID:
ABE39134
UniProt:
Q139V5
LinkDB
All DBs
Position
complement(2132717..2134159)
Genome browser
AA seq
480 aa
AA seq
DB search
MHSIRLDSDTDFHGWRKAARELVLAEVAPADISWTVAGDEPELFDALAPPAPSPSAPSSG
TFNVPARFVELAATAILHRDPQRFAWLYQALWRLRANPELLQIATDPDVARLQAMVKAVR
RDEHKMHAFVRFREIGREPKSRYVAWFEPEHHIVEAAAPFFARRFADMAWSILTPDVCAH
WDGHAIAITPGVAKAMAPSEDRLEETWLTYYASIFNPARLKTKAMQAEMPKKYWRNLPEA
ALIKPLIEHAERAAHAMIAAEATAPKKPQRQEQPMSRAGHEGDRLETLREQARDCRACDL
WKDATQTVFGEGPPHASVMLVGEQPGDKEDLAGHPFVGPAGQMLDRALAEAGIDRAETYV
TNAVKHFKFVPRGKIRLHQKPAMPEIKACRPWYERELAAVRPQLVVAMGATAAQSVLGRI
TPINKNRGHLIDRDGGPQVLVTVHPSYLLRLPDDDAKAREYARFVDDLKIAAAHLKAGAA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgcattccatccggctcgacagcgacaccgatttccatggctggcgcaaggcggcgcgg
gagcttgtgctggcggaggtcgcgccggctgatatcagttggacggtggcaggcgacgag
cccgaattgttcgatgcgctagcgccgcctgcgccctccccgagtgcgccgtcgtccggc
accttcaacgttcccgctcgcttcgtcgagcttgcggcgaccgcgatcctgcatcgcgat
ccgcagcgcttcgcctggctgtatcaagcgctgtggcggctgcgcgccaacccggagctg
ttgcagatcgcgaccgatccggacgttgcgcggctgcaggcgatggtgaaggcggtgcgc
cgcgatgagcacaaaatgcacgccttcgtccgctttcgcgagatcggccgcgagccaaag
tcgcgctacgtcgcctggttcgagcccgagcaccatatcgtcgaggctgcggcaccgttc
ttcgcccggcgcttcgccgacatggcgtggtcgatcctgacgccggacgtctgcgcgcat
tgggacggacacgccattgcgatcacgccgggcgtcgccaaggcgatggccccatccgag
gatcgattggaagaaacctggctgacctactacgccagcatcttcaatccagcgcggctg
aagaccaaggcgatgcaggcggaaatgccgaagaaatactggcgcaatctaccggaagca
gcattgatcaagccgctgatcgagcatgccgagcgcgccgcgcacgcaatgatcgccgcg
gaggcgaccgcgccgaagaaaccacaacggcaggaacagccgatgagccgagccggacac
gaaggcgataggctcgaaaccttgcgcgaacaggcgcgcgactgccgcgcctgcgatctg
tggaaggacgcgacgcagaccgtgttcggcgaaggtcccccgcatgcaagcgtgatgctg
gtcggcgagcagcccggcgacaaggaagacctcgccggccacccgttcgtcggcccggcc
gggcagatgctcgaccgcgcgctggcggaagccgggatcgatcgcgccgagacctacgtc
accaacgcggtgaagcatttcaaattcgtgccgcgcggcaagatccgcctgcaccagaag
ccggcgatgccggaaatcaaggcgtgccggccttggtacgagcgcgagctcgccgcggtg
cgcccgcagctcgtggtggcgatgggcgcgaccgcggcgcagagcgtgctcggcaggatc
acaccgatcaacaagaaccgtggccatctgatcgatcgcgacggcggcccgcaggtgctg
gtcacggtgcacccatcctatctgctccggctgcccgacgacgacgcaaaggcccgcgaa
tacgcacggttcgtcgacgacctgaagatcgccgccgcgcatctgaaggctggggcggcc
tag
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