Rhodopseudomonas palustris BisB5: RPD_2289
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Entry
RPD_2289 CDS
T00345
Name
(GenBank) Superfamily I DNA and RNA helicases-like
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03420
Nucleotide excision repair
rpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPD_2289
03430 Mismatch repair
RPD_2289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_2289
Enzymes [BR:
rpd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPD_2289
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPD_2289
MMR (mismatch excision repair)
Other MMR factors
RPD_2289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
UvrD_C
AAA_19
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ABE39521
UniProt:
Q138G8
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All DBs
Position
complement(2552543..2554171)
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AA seq
542 aa
AA seq
DB search
MVERARQLLNHPDDRRGVAFLSFTNAAVDELEARLRAFGVLPAPLFPSFIGTFDRFLWQF
LIAPFGIPDCDQLPKLVPDKSNWEVKPPYDGAQALRLRCFDRATGKVIPALAKDEGFDVD
KRQIAAHETSALSTIKRARSHGQIDFEDVRVCVRERLSDVAFAKRVGAALAARFREIIVD
EAQDCNPADLQIVDWLRASGIRVKVICDPHQSIYEFRGGVTDELQRFAATFDATDRLPMS
GNFRSSPAICAAIVTLRPPSSRSDPDKPLGPHRNDTTPVHILSYGGSAVSPAIGSTFRGL
VEGLSILLHLAPVLASTRASASKAIGQPTIEPTAHMTLLLAEAAMNYHFAFAVGNRRDAL
VNLHRIVLLVQGRIGALGGYHSYLLSEGLEDGRWRPEIIALANGLRFDQADTVDRWLARA
RSLLVTGLVVNSTINQRLKGHADLTTALARAPTNSSPARTIHSVKGQEFPGVCVVMTTKT
AGAIIDLLEGQTSTGADEEARKIYVGASRAERLLAIAVPKSRAERLQTLLTNGGCEVRLH
QI
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggtcgagcgcgcccgtcagctgctaaatcatcccgacgaccgacgcggcgtcgcgttc
ctgtcctttacaaacgccgcggtcgacgagctggaggcacgcctccgcgcctttggcgtg
ctcccggcgccgctgtttccgagttttatcggaacgttcgatcgatttctctggcagttt
ttgatcgcgccgttcggcattcccgattgcgatcaattaccgaagcttgtccccgacaaa
agcaattgggaggtgaagccgccctacgacggtgcgcaggcgctccggttgcgttgcttt
gaccgagcgacgggcaaggttattcccgctctcgcaaaggacgagggcttcgatgtcgac
aagcgccagatcgcggcgcatgagaccagcgcgctctccacgatcaaacgtgcgcgaagc
cacggccaaatcgacttcgaagatgtccgcgtctgcgtccgtgaaaggctgtcagacgta
gccttcgccaagcgcgtcggtgccgcgctcgctgcccgatttcgggagatcattgtcgac
gaagcccaggactgcaatcccgccgatcttcagatcgtcgattggcttcgggcatccggg
atcagggtgaaggtcatctgcgacccccaccagtcgatctacgaattccggggcggcgtg
accgacgaacttcaacggttcgccgcgacattcgacgcaacggatcgtttgccgatgagc
ggcaatttcagatcaagcccggcaatctgcgcggcgatcgtgacgcttcgaccgccgtca
tcgcggtccgatccggataagccgttgggtccgcatcgcaacgatacgacgcccgtccat
atcctgtcgtacggcggaagcgcggtctctccggctatcggctcaaccttccgaggcctc
gtcgaaggcctgagcatcctcttacatctcgcgccggttctggcgtccacgcgggccagt
gcttcaaaagccatcggtcagccgacgattgagccgaccgcccacatgacgctccttctg
gcggaagcggccatgaactatcatttcgcgttcgctgtaggaaatcgtcgtgacgcactc
gtcaacctgcaccgcatcgtcctgctggttcagggccgcatcggtgcgttgggaggctat
cacagctacctgttgagcgaagggcttgaggacggccgctggcgtccggagatcatcgcg
ctcgccaatggcctccgcttcgaccaggccgataccgttgatcgatggctggccagagcg
cgcagccttctcgtcaccggcctcgtcgtaaactccaccatcaaccagcgcctcaaaggg
cacgcagacctgacgacggcgctcgcacgcgcgccgacaaattcttcgccggcccgcaca
atccactccgtgaaggggcaagaatttcccggagtgtgcgtggtgatgacgacgaagacc
gctggcgcgatcatcgacctcctcgaaggccaaacctcaacgggcgctgacgaagaggcc
cgcaagatctacgtcggagcctctcgagcggaacgcctgctcgcgattgctgtcccgaaa
agccgggccgaacgactccagacacttctcaccaatggtgggtgtgaggtccgtctccat
caaatctga
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