Rhodopseudomonas palustris BisB5: RPD_2499
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Entry
RPD_2499 CDS
T00345
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03410
Base excision repair
rpd03430
Mismatch repair
rpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RPD_2499
03430 Mismatch repair
RPD_2499
03440 Homologous recombination
RPD_2499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_2499
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RPD_2499
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RPD_2499
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPD_2499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ATPgrasp_N
Clathrin_H_link
Motif
Other DBs
NCBI-ProteinID:
ABE39729
UniProt:
Q137L0
LinkDB
All DBs
Position
2793058..2794959
Genome browser
AA seq
633 aa
AA seq
DB search
MCGSALPVCPAPTSCLSAQTMTLPASALPPEPVSAFLGVTRSATGKLWRDRLDPRGTAKA
QAIAQRYQLPEMLARVIAGRGVEIDAVPDFLDPTIRKLMPDPSSVTQMEAGAQRIADAAM
KRETVAIFGDYDVDGATSAALLTWHLRHCGLDPLIHIPDRIFEGYGPNVDAIRGLSEKGA
TLLITVDCGTTSLEPLAEARRLGMSVVVIDHHQCGDELPEVEALINPNRPDDLSGLGHLA
AVGLVMMTLVAVNRELRHRGFWTVELPEPNLLDMLHHVALGTVADVAPLIGLNRAFVAKG
LIALRRRDHVGHTALMDVARLNGPPDVFHLGFMLGPRINAGGRIGRADLGVRLLLEGDVS
EAARIAAELDRLNTERRVIEQMAEAQAEAEAMASLGLEDKGAVIVTASEGWHPGVVGLVA
SRLKEKFGRPAFAIALEPGGIGTGSGRSIGGVDLGRAVRRAVSEGLLMKGGGHAMAAGVT
LRKERLAEFRGWLETALAADVAKSRHINELLIDGAVSARGVTTEFAATLNRAGPFGAGNP
EPVIALPAHQLIYADEVGQAHLRLRFKSGDGAIVNGIAFRSVGQKLGQALTENRGQSLHV
AGSLSIDRWQGAERVQLRVIDVAVPDPGPAMIR
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatcggcgctgccggtttgccctgcgccgacttcatgcttatctgctcagacc
atgacgttgcccgcatccgcattgccgcccgaaccggtgtcggcgtttctcggcgtgacc
cgttccgccaccggcaagctgtggcgcgatcggctcgatccgcgcggcacggcgaaggcg
caggcgatcgcgcaacgctatcaattgccggagatgctggcgcgggtgatcgccggccgc
ggcgtcgagatcgacgcggtcccggatttcctcgatccgaccattcgcaagctgatgccc
gatccgtcgtcggtgacgcagatggaggcgggcgcgcagcgcatcgccgacgccgcgatg
aagcgcgagacggtggcgatcttcggcgactacgacgtcgacggcgcgacctcggcggcg
ctgctcacctggcacctgcggcattgcgggctcgatccgctgatccacattcccgaccgc
atcttcgaaggctatggccccaatgtcgacgccatccgcgggctgtcggagaagggcgcg
acgctgctgatcacggtcgattgcggcaccaccagcctcgagcctttggccgaggcgcgc
aggctcggcatgtcggtggtggtgatcgatcatcaccaatgcggcgatgaactgcccgag
gtcgaggcgctgatcaatccgaaccggcccgacgatctgtccggcctcggccatctcgcc
gctgtcgggctggtgatgatgacgctggtcgcggtcaatcgcgagctgcgccatcgcggc
ttctggaccgtcgaactaccggagcccaatctgctcgacatgctgcatcacgtcgcgctc
ggcaccgtcgccgacgtcgcgccgctgatcgggctcaaccgcgctttcgtcgccaaggga
ctgatcgcgctgcgccggcgcgaccatgtcggccacaccgcgctgatggacgtggcgcgg
ctcaacgggccgccggacgtgtttcatctcggcttcatgctcgggccgcggatcaatgcc
ggcgggcggatcggccgcgccgatctcggggtgcggctattgctcgaaggcgacgtctcg
gaggcggcgcggatcgccgccgaactcgatcgcctcaataccgagcggcgcgtgatcgag
cagatggcggaagcgcaggccgaagccgaggcgatggcctcgctggggctggaagacaag
ggcgcggtgatcgtcaccgcctccgagggctggcatcccggcgtggtcgggctggtggcg
tcgcgactgaaggagaagttcggccggccggccttcgcgatcgcgctcgagcccggcggc
atcggcaccggttcgggccgatcgatcggtggcgtcgatctcggccgtgcggtgcgccgc
gcggtgagcgaaggcctgctgatgaaaggcggcggccacgcgatggccgcgggcgtgacg
ctgcgcaaggagcggctcgccgaattccgcggctggctcgaaaccgcgctcgccgccgac
gtcgcgaaatcccgccatatcaacgagctgttgatcgacggcgcggtgtcggcgcgcggg
gtgacgacggagttcgcggcgacgctcaatcgcgccggcccgttcggcgccggcaatccg
gagccggtgatcgcgctgccggcgcatcagctgatctatgccgacgaggtcgggcaggcg
catctgcggctgcgcttcaaatccggcgacggcgccatcgtcaacggcatcgcgttccgc
agcgtcggccagaagctcgggcaggcgctcacggaaaatcgtggccagtcgctgcacgtc
gcgggctcgctttcgatcgaccgctggcagggcgccgagcgcgtccagctacgcgtgatc
gacgtcgcggtgcctgatcccggacctgcgatgatcaggtga
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