Rhodopseudomonas palustris BisB5: RPD_2858
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Entry
RPD_2858 CDS
T00345
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03030
DNA replication
rpd03430
Mismatch repair
rpd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPD_2858
03430 Mismatch repair
RPD_2858
03440 Homologous recombination
RPD_2858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpd03032
]
RPD_2858
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_2858
Enzymes [BR:
rpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RPD_2858
DNA replication proteins [BR:
rpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RPD_2858
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RPD_2858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ABE40086
UniProt:
Q136A3
LinkDB
All DBs
Position
complement(3184743..3188198)
Genome browser
AA seq
1151 aa
AA seq
DB search
MSNAGFVHLHVHSAYSLLKGSMKIARLAELAKADHQPALALTDTDNMFGALEFSDKLAGS
GIQPIVGLELGIDFGDQDPNSRNTAVAAPSRIVLLATRERGYRSLMRLNSRAFLETPVNQ
PPHIKFDWLDGETEDVIALTGGPDGPISLAMLTDPALGRLRCERLAQAFGDRLYVELQRH
NTDFERRAEAGLIDVAYDMGLPLVATNEPHFATSDDFEAHDALLCIASGKLIAETDRVQL
TPDHRFKTRAEMAVLFADLPEALASTVEIAQRCAYRPLTRKPILPLFTVGASVNDAEEAA
AAEAAELRRQAEQGLADRMRIHGLSQGMSEEDYRKRLAFELDVITRMKYAGYFLIVSDFI
KWAKAHGIPVGPGRGSGAGSLVAYSLTITDLDPIRFGLLFERFLNPERVSMPDFDIDFCQ
DRRGEVIEYVQQRYGRDQVAQIITFGTLQARGVLRDVGRVLQMPYGQVDKLTKLVPQNPA
APVSLKQAIESEPKLQAFRDEDPVVARAFDIAQKLEGLTRHASTHAAGIVIGDRPLSDLV
PMYRDPKSDMPVTQFNMKWVEPAGLVKFDFLGLKTLTVLDVAVKLLKQRNIHIDLATLGI
EDAPSYQMLARGDVVGVFQVESQGMRRALVDMRPDRFEDIIALVALYRPGPMANIPTYCA
RKHGDEEPEYLHPMLEPILKETFGVIIYQEQVMQIAQVMAGYSLGEADLLRRAMGKKIRA
EMEKQRAIFVEGATRNGVPKDAADTIFDLLAKFADYGFNKSHAAAYALVSYHTAYMKAHY
PVEFIAASMTLDLNNTDKLSEFRAEAQRLGIKVEAPSVNRSGPTFEVGENTIYYALAGLK
GVGQHAVQMIVEARGDKPFSSLADFAARVNPRAINKRVIESLAAAGAFDCLDPNRARVFA
GADAIIAACQRSHEAATSGQNDMFGGLADAPSIVLPQVEPWLPAERLRREYDAIGFFLSG
HPLDDYATALKRLRVQSWSDFCKAVKSGATAGKVAATVVSRMERRTKTGNKMGIMGLSDP
TGHFEAVLFSEGLAQYREVLEPGAAVLLQLGAELQGEDVRARVLHAEPLDAAAAKTQKGL
RIFLRDTKPLDSISKRLQPPETKVAGGNIALVLRLDPQTEVEFEIPGRFQVSPQIAGAIK
AVIGVEHVETL
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgccggattcgtccatctgcacgttcactcggcctattcgctgctgaagggc
tcgatgaagatcgcgcggctggcggaactcgccaaagccgaccaccagccggcgctggcg
ttgaccgacaccgacaacatgttcggcgcgctggaattctccgacaagctcgccggcagc
ggcatccagccgatagtcggcctcgaactcgggatcgatttcggcgaccaggacccgaac
tcgcgcaacaccgcggtggcggcgccgtcgcggatcgtgctgctggcgacgcgcgagcgc
ggctatcgcagcctgatgcggctgaattcgcgggcgttcctcgaaaccccggtgaaccag
ccgccgcacatcaaattcgactggctcgacggcgagaccgaggacgtgatcgcgttgacc
ggcggcccggatggcccgatctcgctggcgatgctgaccgatccggcgctgggacggctg
cgctgcgagcggctggcgcaggcgttcggcgaccggctctatgtcgagctgcagcgccac
aacaccgatttcgagcgccgcgctgaagcagggctgatcgacgtcgcttacgatatgggg
ctgccgctggtcgccaccaacgagccgcattttgcgacctccgatgatttcgaggcgcac
gacgcgctgctgtgcatcgcctccggcaagttgatcgccgagaccgatcgcgtccagctc
acgcccgaccaccgcttcaagacccgcgccgaaatggcggtgctgtttgctgatctgccg
gaggcgctggcctccaccgtcgagatcgcgcaacgctgcgcctatcggccgctgacccgc
aagccgatcctgccgctgttcaccgtcggcgccagcgtcaacgacgccgaggaggcggcg
gctgcggaagccgccgaactgcgtcgccaggccgagcaggggctcgccgaccggatgcgc
atccacggcctgtcgcagggcatgtccgaggaggactatcgcaagcggctcgccttcgag
ctcgatgtcatcacccggatgaaatatgccggttacttcctgatcgtgtccgacttcatc
aaatgggccaaggcgcatggcattccggtcggcccgggccgtggctccggcgccggctcg
ctggtggcgtattcgctgaccattaccgatctcgatccgatccgcttcggcctgctgttc
gagcgcttcctcaatcccgaacgcgtctcgatgccggacttcgacatcgacttctgccag
gaccgccgcggcgaagtgatcgaatatgtgcagcagcgctacggccgcgatcaggtcgcc
cagatcatcactttcggtacgctgcaggcgcgcggcgtgctgcgcgacgtcggccgcgtt
ctgcagatgccgtacgggcaggtcgacaagctgaccaagctggtgccgcagaatcccgcc
gcgccggtgtcgctgaagcaggcgatcgaaagcgagccgaagctgcaggcctttcgcgac
gaagacccggtggtggcgcgcgccttcgacatcgcgcagaagctcgagggcctgacccgc
cacgcctcgacccacgccgccggcatcgtgatcggcgatcggccgctcagcgatctggtg
ccgatgtatcgcgatcccaaatccgatatgccggtgacccagttcaacatgaaatgggtc
gagccggcgggtctggtgaagttcgacttcctcggcctcaagacgctcaccgtgctcgat
gtcgcggtgaagctgctcaagcagcgcaatatccatatcgatctggcgacgctcgggatc
gaggacgctccgagctatcagatgttggcgcgcggcgatgtggtcggcgtgtttcaggtt
gaaagtcagggcatgcgccgcgcgctggtcgacatgcgccccgaccgcttcgaggacatc
attgcgctggtcgcgctgtatcgcccgggtccgatggcgaacatcccgacctattgcgcg
cgcaagcacggcgacgaggagccggaatatctgcatccgatgctggagccgattctcaag
gagacgttcggcgtcatcatctaccaggaacaggtgatgcagatcgcgcaggtgatggcc
ggctactcgctcggcgaagccgacctgctgcgccgcgcgatgggcaagaagatccgcgcc
gagatggagaagcagcgcgcgatcttcgtcgagggcgccaccaggaacggcgtgcccaag
gacgccgccgacacgatcttcgatctgctggcgaagttcgccgactacggcttcaacaag
agtcacgcggccgcctacgcgctggtgtcgtatcacaccgcctatatgaaggcgcattat
ccggtcgagttcatcgcggcgtcgatgacgctcgatctcaacaacaccgacaagctgtcg
gaattccgcgccgaggcgcagcgactcggcatcaaggtcgaagcgccctcggtcaatcgg
tccggcccgaccttcgaggtcggcgagaatacgatctactacgcgctcgctggcctgaag
ggcgtcggccagcacgcggttcagatgatcgtcgaggcgcggggcgacaagccgttcagc
tcgctcgcggacttcgccgcccgggtcaatccgcgggcgatcaacaagcgggtgatcgaa
agcctcgcggccgccggcgcgttcgactgcctcgatcccaaccgcgcgcgggtgttcgcc
ggcgccgacgcgatcatcgccgcctgccagcgcagccacgaggccgccaccagcggccag
aacgacatgttcggcggacttgcggatgcgccatcgatcgtgctgccgcaggtcgagccg
tggcttccggcggagcggctgcggcgcgaatacgacgccatcggcttcttcctgtccggt
cacccgctcgacgactacgccaccgcgctgaagcggctgcgggtgcaatcctggtcggat
ttctgcaaggcggtgaagtcgggcgcgacggcggggaaggttgcggccacggtggtgtcg
cggatggagcgccgcaccaagaccggcaacaagatggggatcatgggcctgtccgacccg
accggccatttcgaggcggtgctgttctccgaggggctcgcgcagtatcgggaagtgctg
gagccgggcgccgcggtgctgctgcagctcggcgccgagctgcagggcgaggacgttcgc
gcccgcgtgctgcacgccgagccgctcgacgctgctgccgccaagacccagaaagggctg
cggattttcctgcgggacaccaaaccgctggattcgatctcgaaacggctgcagccgccg
gagaccaaggtcgcgggaggcaatatcgccctggtgctgcggctcgacccgcagaccgag
gtcgaattcgagattcccggccggtttcaggtgtcgccccagatcgccggggcgatcaag
gcggtgatcggggtcgagcacgtcgagacgctctga
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