Rhodopseudomonas palustris BisB5: RPD_3003
Help
Entry
RPD_3003 CDS
T00345
Name
(GenBank) Outer membrane autotransporter barrel
Organism
rpd
Rhodopseudomonas palustris BisB5
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TIG
Motif
Other DBs
NCBI-ProteinID:
ABE40229
UniProt:
Q135L0
LinkDB
All DBs
Position
3343763..3348850
Genome browser
AA seq
1695 aa
AA seq
DB search
MKALTESTQRGDPCLDQCRSPAARFSAAVAALISPLVCRAHLILWLTSACIVSVLTPTLS
WASASCTAVNGSALNYSVSFSSPGNPDDGKGFNEAYLMSFATGDTIHYSVTISTIAGTID
AGFIADYSFGIPTTFNNNLSGAGFHTSTSGSYTLSASDVMKINSNPDGSWTPGLSSQAID
HTFSGFLGSVSFSATCTAAGSPTVSSVSPSSGPTAGGTSVTITGTNFGGATSVSFGSNSV
PSSSFTSSSATQIVVPSPAGSAGTVHVTVTNAIGTSPTSSSDQFTYVAAPTIGSISPSSG
PTTGGTSVTITGTNLSGVTGVTVGGASATLGANTSTSIAITTPSGTAGARDVVVTTAGGS
VTSTGGFAFIAAPTIGSISPNSGPTGGGTSVTITGTNLSGVTGVTVGGASATLGANTSTS
IVITTPSGTAGARDVVVTTAGGSVTSTGGFTYIAAPTIGTISPSSGPTGGGTSVTITGTN
LSGVTSVTVGGASATLGSNTSTSIVITTPSGTAGARDVIVTTAGGAVTSTGGFTYIAAPT
IGTISPSSGPTGGGTNVTITGTNLSGVTGVTVGGASATLGTNTSTSIVITTPSGTAGARD
VIVTTAGGSATSTGGFTYIAGPTIGTISPNSGPTAGGTSVTITGTNLSGVTSVTIGGAAA
TLGSNTSTSIVITTPAGTAGARDVVLTTAGGSVTSTGGFTYAAAPTISTVTPSSGSTGGG
TSVTITGTNLSGVTSVTVGGTAATLGTNTSTSIVITTPTGTAGARDVVLTTAGGSVTSTG
GFTYILSPSISTISPNAGPSAGGTSVTISGTNLSGVTSVTIGGAAATLGTNTSTSIVVTT
PAGTAGARDVVVTTSGGSVTAVGGFTYAGPPTIGTISPSSGPTGGGTSVTITGSNLANIT
NVTIGGAAASLGANTSTSIVVTTPSGAVGARDVVVSTAGGSVTSTGGFTYVAAPTISSIS
PSSGLAAGGTSVTITGTNLSGVTSVTVGGAAATLGINTATSIVITTPAGTAGARDVVVTT
AGGPVTSTAGFTYISAATVTAISPAVGPISGGTSVTITGTNFTGATAVTIGGAAATGVSI
VNATTITATTSAHAAGNVDVVVTTPGGTATGSGLYSYVSGPVVTSISPASGPSAGGTSVT
ITGSNLAGATAVSFGGAAATAVSVTSATTITATTPAHAAGAVDVTVTTPGGSSTGAGLFS
YIVAATTTTLTSSHNPSEAGQPVSFTATVTANGSVPTGTVTFTDGGVVIGSVGLSGGAAT
LTTSSLTIGSHTIVAAFAANASFSASTSSPLLQAVNTPQDSLKLRAMQIMASKTIAQTSG
AAISGAIDTAISEGFNDGGELITPSGSGLRFNFTDDLSQSRAGTPESTVESRWPAFASHG
SGAPGHQATGFGLGDPQSSGRAQARFDDTFAAIDRKPDIAKAPAKAPAVPKDWLMWAEVK
GASIGQWNSTSTASVLSGNQVNALIGLTRRPSPDLLIGVIGGYETFDYKSGTLNGRLKGD
GWTIGSYAAWRSAAGLRFDIAGAYSGIGYDGSAGTAFGSFDGRRWLMSGGVTGSTEAFGF
AIEPSAKVYALWESQNAYVDSLGTTQAQREFFTGRASAGLKVSYPWLYSATLTLAPYTGV
FADYYFLGDNAETITLAGGTPLASVPLMDGWSARVTGGIAARFGNGAAVAVGGELGGLGG
TVQIWTLRGRASVPF
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccctcacggaaagcacgcagcgtggcgatccttgcctggaccagtgtagatcg
cctgccgcgcgcttctccgcagccgtcgccgcgctgatatcgccgttggtatgcagagct
cacttaattctgtggctcacctcagcctgcatcgtctcggtactcacgccaacgctgagt
tgggcatcggcgagctgcacggcggtaaacggcagcgccttgaattatagcgtgtcgttc
tcgtcgccgggcaaccccgacgacggaaagggattcaacgaggcctacctgatgtcgttc
gctactggcgacaccatccattattccgtgacgatatccacgatagcgggcacaatcgac
gccggatttatcgctgactattcgttcggtattccaacgactttcaataataatctcagc
ggtgccggattccataccagcacctccggcagctacacactgtcggccagcgacgtgatg
aagatcaacagcaatccggacggatcgtggactccgggtctttcttcgcaagcgatcgac
cataccttcagtggatttctaggcagcgtctcgttctcggctacctgcactgcagcaggt
agtccaacggtctcgtcggtctcgccgtcgtccggcccgaccgccggcggcacttcggta
accatcaccggcacgaatttcggtggcgctacctcggtgagcttcggctcgaactcggtg
ccgagcagcagcttcacaagcagctctgcaacccaaatcgtcgtgccgtcgccggccggc
agtgccggcaccgtgcacgtcaccgtgaccaacgccatcggcacgtcgccgacgagctcc
agcgatcaatttacctatgtggcggctccgacgatcggctcgatctcgccgagctcaggc
ccaaccaccggcgggaccagcgtcaccatcaccggcaccaacctgtccggggtcaccggc
gtcaccgtcggcggcgcatcggcgacgctcggcgccaatacgtcgacgtcgattgcgatc
accacgccgtccggaacggcaggggcacgcgatgtcgtggtgacaactgcgggcggttcg
gtcacctcgaccggcggttttgcgtttatcgccgcgccgacgatcggttcgatctcgccg
aactcgggcccgaccggcggcggcaccagcgtcaccatcaccggcaccaacctgtccggg
gtcaccggcgtcaccgtcggcggcgcatcggcgacgctcggcgccaatacatcgacctcg
atcgtgattaccacgccgtccggaacggccggcgcgcgggacgtggtggtcacgaccgcg
ggcggttcggtcacctcgaccggcgggtttacgtatatcgccgcgccgacgatcggtacg
atctcgccgagctctggcccgaccggcggcggcaccagcgtcaccatcaccggcaccaac
ttgtcaggcgtcacaagtgtgacggtcggcggggcatcggcgacgcttggatccaatacg
tcgacctcgatcgtgatcacgacgccgtccgggacggccggggcgcgcgacgtgatcgtg
accactgccggtggggcggtcacctcgaccggcgggtttacatatatcgctgcgccgaca
atcggtacgatctcgccgagctcaggcccgaccggcggcggcaccaacgtcaccatcacg
ggtaccaacttgtccggcgtcaccggtgtgacggtcggcggggcatcggcaacgctcgga
accaatacgtcgacctcgatcgtgattaccacgccgtccgggacggccggggcgcgcgac
gtgatcgtgaccactgccggcgggtcggccacctcgaccggcggcttcacctacatcgca
ggacctaccatcggcacgatctcgccgaattcgggaccgaccgcaggcgggaccagcgtc
accatcaccggcaccaatctgtcgggtgtcacctcggtcaccatcggcggcgcggccgcg
acgctcgggagcaacacgtcgacatcgatcgtgatcacaacaccggccggcacggccggg
gcgcgcgatgtcgtgctgaccacggccggcggctcagtcacctcgaccggcggattcacc
tatgcggccgcgccgacgatcagcaccgttacgccaagctccggttcgaccggcggcggc
acatcggtgacgatcacaggcaccaatctgtccggcgtcacctcggtcaccgtcggcggc
acggccgcgacgctcgggaccaatacgtcgacatcgatcgtgatcacaacgccgaccggc
acggccggggcgcgcgatgtcgtgctgaccacggccggtggttcggtcacttcgaccggc
ggcttcacctatatcctgtcgccgtcgatcagtacgatctcgccgaatgccggcccgagc
gcgggcggcacatcggtgacgatcagcggcaccaatctgtcgggcgtcacctcggtcacc
atcggcggcgcggccgccacgctgggcaccaacacatcgacctcgatcgtcgtgacgacc
ccggccggcacagctggggcccgcgacgtcgtggtgacgaccagcggtggctcggttacg
gcggtcggcggcttcacctatgcgggaccgccgacgatcggcacgatatcgccgagttcc
ggaccaaccggcggcggcacctcggtgaccatcacgggcagcaatcttgccaacatcacc
aacgtcaccatcggcggggcggccgcatcactcggcgcgaatacatccacatcgatcgtg
gtgaccacgcccagcggcgccgtcggcgcgcgggacgtcgtcgtgtcgaccgcgggagga
tccgtcacctcgactggcggcttcacctatgtggcagccccgaccatcagctccatctca
ccaagctccggcttggccgccggcggcacctcggtgaccatcaccggcaccaatctgtcc
ggcgtcacctcggtgaccgtcggcggtgcggcggcaacgctcggcatcaacaccgcgaca
tcgatcgtcatcacgactccggccggcaccgccggtgcacgcgacgtcgtggtcacgacc
gcgggcggccccgtcacatcgaccgccggcttcacttacatctcggccgcaacggtgacg
gcgatttcacctgcagtcggcccgatcagcggcggcacatcggtcaccatcaccggcacg
aacttcacaggcgcaacggccgtgaccatcggtggcgccgcggccaccggcgtcagcatc
gtgaacgccaccacgatcaccgcgaccacgtcggctcacgccgctggcaacgtcgacgtc
gtggtgacgacccccggtggcactgcgacgggatccggcctttacagctacgtctccggc
ccggtcgtcacctcgatcagtccggcgagcggtccaagcgccggcggaacatcggtgacg
atcaccggaagcaacctggccggggcgaccgcggtgagcttcggcggcgccgcggccacc
gcggtgagcgtgacgagcgccaccaccatcaccgcaacgacgccggcacatgcggcgggt
gcggtcgacgtcaccgtcacgacgcccggcggcagcagcaccggcgccggccttttcagc
tacatcgtcgcggcgaccaccaccaccctcacctcgtcgcacaatcccagcgaagctggt
cagccggtgagcttcaccgcgacggtgacggcgaacggctccgtcccgaccggcaccgtt
acctttactgacggcggcgtggtgatcggctcggttgggctgtccggcggcgccgcgacg
ctcaccaccagcagcctgacgattggatcccacaccatcgtcgcggcattcgccgccaac
gccagcttctccgccagcacctcgtcgccgctgctgcaggcggtcaacacgccgcaggac
agcctgaagctgcgcgccatgcagatcatggccagcaagaccatcgcccagacctccggc
gcagcgatttcgggcgcgatcgatacggcgatttccgagggcttcaacgacggcggcgag
ctgatcacgccatcaggctcaggcctgcgcttcaacttcactgacgatctctcccaaagc
agagccggcactccggaaagcacggtcgaaagccgctggccggctttcgcctcgcacggc
agcggcgcgccgggccatcaggcaaccgggttcggccttggcgacccgcaatcgtccggg
cgcgctcaggcccgcttcgacgacacgttcgcggcgatcgaccgcaagcccgacatcgcc
aaagcaccggccaaggcgccggccgtgccgaaggactggctgatgtgggccgaggtcaag
ggagcaagcatcggccaatggaattcaaccagtacggcatcggtgctgtcgggcaatcag
gtgaatgcgttgatcggactgacgcgaaggccgtccccggacctgctgatcggtgttatc
ggcggttatgagacgttcgactacaagtcgggcacgctcaacggccggctcaagggcgat
ggctggacgatcggctcctacgcggcctggcgatccgccgccggactacgcttcgatatc
gctggcgcctattcggggatcggttacgacggctcggccggcaccgccttcggcagcttc
gatggacggcgctggctgatgtccggcggcgtcactggctccaccgaggcgttcggtttc
gcgatcgagccttccgccaaggtgtacgcgctatgggagagccagaatgcctatgtcgac
tccctcggcacaacgcaggcgcagcgcgaattcttcactggccgggcctcggccgggctc
aaggtaagctatccctggctctacagcgcgacgctgacgctcgcgccctacaccggagtc
tttgccgactactacttcctcggcgacaacgcggagacgatcacgctcgctggcgggacg
ccgctggcgtcggtgcctctgatggacggctggtccgcccgggtgaccgggggcatcgca
gcgcggttcggcaatggcgcggcagtcgcggtcggtggagaactcggtgggctgggcggc
acagtgcagatctggacgctccgcggccgggcgtcggtgccattctaa
DBGET
integrated database retrieval system
